Description : component *(eS17) of small ribosomal-subunit (SSU) proteome
Gene families : OG_42_0002664 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002664_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.E03000.1 | |
Cluster | HCAA Clusters: Cluster_91 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
270936 | No alias | Ribosomal S17 family protein | 0.07 | Orthogroups_2024-Update | |
At3g10610 | No alias | 40S ribosomal protein S17-3... | 0.04 | Orthogroups_2024-Update | |
At5g04800 | No alias | 40S ribosomal protein S17-4... | 0.03 | Orthogroups_2024-Update | |
Brara.B00154.1 | No alias | component *(eS17) of small ribosomal-subunit (SSU) proteome | 0.07 | Orthogroups_2024-Update | |
Brara.C00178.1 | No alias | component *(eS17) of small ribosomal-subunit (SSU) proteome | 0.09 | Orthogroups_2024-Update | |
Brara.J02711.1 | No alias | component *(eS17) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
Cre12.g498250 | No alias | Ribosomal S17 family protein | 0.07 | Orthogroups_2024-Update | |
Glyma.07G219500 | No alias | Ribosomal S17 family protein | 0.07 | Orthogroups_2024-Update | |
Glyma.20G017700 | No alias | Ribosomal S17 family protein | 0.05 | Orthogroups_2024-Update | |
Kfl00038_0080 | kfl00038_0080_v1.1 | (at5g04800 : 192.0) Ribosomal S17 family protein;... | 0.03 | Orthogroups_2024-Update | |
LOC_Os03g01900 | No alias | 40S ribosomal protein S17, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_184894g0010 | No alias | (at5g04800 : 212.0) Ribosomal S17 family protein;... | 0.04 | Orthogroups_2024-Update | |
Mp8g18950.1 | No alias | component RPS17 of SSU proteome | 0.05 | Orthogroups_2024-Update | |
PSME_00034734-RA | No alias | (at5g04800 : 198.0) Ribosomal S17 family protein;... | 0.02 | Orthogroups_2024-Update | |
Potri.008G017300 | No alias | Ribosomal S17 family protein | 0.04 | Orthogroups_2024-Update | |
Pp1s39_286V6 | No alias | 40s ribosomal protein | 0.02 | Orthogroups_2024-Update | |
Pp1s39_287V6 | No alias | 40s ribosomal protein | 0.03 | Orthogroups_2024-Update | |
Pp1s76_75V6 | No alias | 40s ribosomal protein | 0.03 | Orthogroups_2024-Update | |
Seita.9G218400.1 | No alias | component *(eS17) of small ribosomal-subunit (SSU) proteome | 0.07 | Orthogroups_2024-Update | |
Seita.9G497100.1 | No alias | component *(eS17) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
Sobic.010G076400.1 | No alias | component *(eS17) of small ribosomal-subunit (SSU) proteome | 0.13 | Orthogroups_2024-Update | |
Solyc05g055230 | No alias | 40S ribosomal protein S17 (AHRD V3.3 *** RS17_SOLLC) | 0.12 | Orthogroups_2024-Update | |
Solyc11g006690 | No alias | 40S ribosomal protein S17 (AHRD V3.3 *** RS17_SOLLC) | 0.14 | Orthogroups_2024-Update | |
Sopen05g033670 | No alias | Ribosomal S17 | 0.08 | Orthogroups_2024-Update | |
Sopen10g032640 | No alias | Ribosomal S17 | 0.14 | Orthogroups_2024-Update | |
Sopen11g002620 | No alias | Ribosomal S17 | 0.12 | Orthogroups_2024-Update | |
evm.model.contig_2507.2 | No alias | (at2g05220 : 160.0) Ribosomal S17 family protein;... | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | 16Dec |
CC | GO:0005840 | ribosome | IEA | 16Dec |
BP | GO:0006412 | translation | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003924 | GTPase activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0004814 | arginine-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
MF | GO:0005525 | GTP binding | IEP | Predicted GO |
CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
BP | GO:0006420 | arginyl-tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Predicted GO |
CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0016462 | pyrophosphatase activity | IEP | Predicted GO |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predicted GO |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Predicted GO |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
CC | GO:0019867 | outer membrane | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001210 | Ribosomal_S17e | 1 | 120 |
No external refs found! |