1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.E03347.1

Brara.E03347.1


Description : nucleocytoplasmic transport cargo adaptor protein *(IMP-alpha)


Gene families : OG_42_0000552 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000552_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E03347.1
Cluster HCAA Clusters: Cluster_361

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G039600 No alias importin alpha isoform 2 0.03 Orthogroups_2024-Update
PSME_00004959-RA No alias (q71vm4|ima1a_orysa : 471.0) Importin alpha-1a subunit -... 0.03 Orthogroups_2024-Update
PSME_00007271-RA No alias (at3g06720 : 573.0) Encodes importin alpha involved in... 0.02 Orthogroups_2024-Update
PSME_00013713-RA No alias (at3g06720 : 432.0) Encodes importin alpha involved in... 0.03 Orthogroups_2024-Update
evm.model.contig_2154.12 No alias (q9slx0|ima1b_orysa : 536.0) Importin alpha-1b subunit -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
BP GO:0006606 protein import into nucleus IEA 16Dec
MF GO:0061608 nuclear import signal receptor activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005672 transcription factor TFIIA complex IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032413 Arm_3 460 506
IPR000225 Armadillo 187 228
IPR000225 Armadillo 105 143
IPR000225 Armadillo 358 393
IPR000225 Armadillo 313 354
IPR000225 Armadillo 145 184
IPR002652 Importin-a_IBB 15 91
No external refs found!