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  5. Brara.E03419.1

Brara.E03419.1


Description : component *(eS1) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001814 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E03419.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
271906 No alias Ribosomal protein S3Ae 0.04 Orthogroups_2024-Update
271907 No alias Ribosomal protein S3Ae 0.06 Orthogroups_2024-Update
A4A49_56002 No alias 40s ribosomal protein s3a 0.14 Orthogroups_2024-Update
At3g04840 No alias 40S ribosomal protein S3a-1... 0.05 Orthogroups_2024-Update
Bradi1g71200 No alias Ribosomal protein S3Ae 0.2 Orthogroups_2024-Update
Bradi1g78170 No alias Ribosomal protein S3Ae 0.31 Orthogroups_2024-Update
Bradi3g01210 No alias Ribosomal protein S3Ae 0.24 Orthogroups_2024-Update
Brara.A00356.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.K00335.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Cre13.g568650 No alias Ribosomal protein S3Ae 0.27 Orthogroups_2024-Update
GRMZM2G145258 No alias Ribosomal protein S3Ae 0.11 Orthogroups_2024-Update
Glyma.01G236600 No alias Ribosomal protein S3Ae 0.05 Orthogroups_2024-Update
Glyma.10G245200 No alias Ribosomal protein S3Ae 0.18 Orthogroups_2024-Update
Glyma.11G006600 No alias Ribosomal protein S3Ae 0.16 Orthogroups_2024-Update
Glyma.20G149400 No alias Ribosomal protein S3Ae 0.06 Orthogroups_2024-Update
HORVU1Hr1G032060.4 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
HORVU4Hr1G070370.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.25 Orthogroups_2024-Update
Kfl00143_0140 kfl00143_0140_v1.1 (p33444|rs3a_catro : 380.0) 40S ribosomal protein S3a... 0.04 Orthogroups_2024-Update
LOC_Os03g10340 No alias 40S ribosomal protein S3a, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g21798 No alias 40S ribosomal protein S3a, putative, expressed 0.04 Orthogroups_2024-Update
MA_124901g0010 No alias (at4g34670 : 410.0) Ribosomal protein S3Ae; FUNCTIONS... 0.03 Orthogroups_2024-Update
MA_31004g0010 No alias (at4g34670 : 389.0) Ribosomal protein S3Ae; FUNCTIONS... 0.06 Orthogroups_2024-Update
Mp6g02810.1 No alias component RPS3a of SSU proteome 0.03 Orthogroups_2024-Update
PSME_00005371-RA No alias (at4g34670 : 408.0) Ribosomal protein S3Ae; FUNCTIONS... 0.06 Orthogroups_2024-Update
Potri.005G051200 No alias Ribosomal protein S3Ae 0.05 Orthogroups_2024-Update
Potri.008G156300 No alias Ribosomal protein S3Ae 0.07 Orthogroups_2024-Update
Potri.010G083200 No alias Ribosomal protein S3Ae 0.06 Orthogroups_2024-Update
Pp1s179_15V6 No alias 40s ribosomal protein s3a 0.22 Orthogroups_2024-Update
Pp1s17_306V6 No alias 40s ribosomal protein s3a 0.2 Orthogroups_2024-Update
Pp1s219_50V6 No alias 40s ribosomal protein s3a 0.26 Orthogroups_2024-Update
Pp1s80_113V6 No alias 40s ribosomal protein s3a 0.04 Orthogroups_2024-Update
Pp1s92_47V6 No alias 40s ribosomal protein s3a 0.04 Orthogroups_2024-Update
Seita.2G378300.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.29 Orthogroups_2024-Update
Seita.9G502500.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.26 Orthogroups_2024-Update
Sobic.001G467300.3 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Sobic.002G364100.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.37 Orthogroups_2024-Update
Sobic.002G364500.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.28 Orthogroups_2024-Update
Solyc06g072490 No alias 40S ribosomal protein S3a (AHRD V3.3 *** RS3A_TOBAC) 0.4 Orthogroups_2024-Update
Solyc09g082520 No alias 40S ribosomal protein S3a (AHRD V3.3 *** K4CVM9_SOLLC) 0.14 Orthogroups_2024-Update
Sopen06g028860 No alias Ribosomal S3Ae family 0.42 Orthogroups_2024-Update
Sopen09g031380 No alias Ribosomal S3Ae family 0.09 Orthogroups_2024-Update
evm.model.contig_2340.2 No alias (p49397|rs3a_orysa : 304.0) 40S ribosomal protein S3a... 0.44 Orthogroups_2024-Update
evm.model.tig00020710.39 No alias (at4g34670 : 313.0) Ribosomal protein S3Ae; FUNCTIONS... 0.18 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008837 diaminopimelate epimerase activity IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
MF GO:0047661 amino-acid racemase activity IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001593 Ribosomal_S3Ae 16 221
No external refs found!