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  5. Brara.E03459.1

Brara.E03459.1


Description : component *(uS9) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0002098 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002098_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E03459.1
Cluster HCAA Clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
138369 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.26 Orthogroups_2024-Update
A4A49_19998 No alias 40s ribosomal protein s16 0.16 Orthogroups_2024-Update
A4A49_23464 No alias 40s ribosomal protein s16 0.12 Orthogroups_2024-Update
A4A49_46097 No alias 40s ribosomal protein s16 0.17 Orthogroups_2024-Update
Cre13.g573351 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.11 Orthogroups_2024-Update
GRMZM2G353103 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.12 Orthogroups_2024-Update
GRMZM2G377797 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.08 Orthogroups_2024-Update
GRMZM2G427014 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.1 Orthogroups_2024-Update
Glyma.02G103600 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.19 Orthogroups_2024-Update
Glyma.05G241200 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.17 Orthogroups_2024-Update
Glyma.08G048200 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.29 Orthogroups_2024-Update
HORVU4Hr1G023530.1 No alias component *(uS9) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
HORVU4Hr1G023570.2 No alias component *(uS9) of small ribosomal-subunit (SSU) proteome 0.23 Orthogroups_2024-Update
HORVU5Hr1G045620.1 No alias component *(uS9) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Kfl00461_0050 kfl00461_0050_v1.1 (p46293|rs16_goshi : 254.0) 40S ribosomal protein S16 -... 0.08 Orthogroups_2024-Update
LOC_Os12g03090 No alias ribosomal protein, putative, expressed 0.06 Orthogroups_2024-Update
Mp1g07720.1 No alias component RPS16 of SSU proteome 0.06 Orthogroups_2024-Update
Mp1g14290.1 No alias component RPS16 of SSU proteome 0.24 Orthogroups_2024-Update
Potri.001G304700 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.15 Orthogroups_2024-Update
Potri.008G150000 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.010G091000 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s17_377V6 No alias 40s ribosomal protein s16 0.23 Orthogroups_2024-Update
Pp1s199_17V6 No alias 40s ribosomal protein s16 0.11 Orthogroups_2024-Update
Pp1s225_61V6 No alias 40s ribosomal protein s16 0.05 Orthogroups_2024-Update
Pp1s228_28V6 No alias 40s ribosomal protein s16 0.09 Orthogroups_2024-Update
Pp1s290_44V6 No alias 40s ribosomal protein s16 0.09 Orthogroups_2024-Update
Seita.7G306900.1 No alias component *(uS9) of small ribosomal-subunit (SSU) proteome 0.23 Orthogroups_2024-Update
Seita.8G007700.1 No alias component *(uS9) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Sobic.005G019700.1 No alias component *(uS9) of small ribosomal-subunit (SSU) proteome 0.31 Orthogroups_2024-Update
Sobic.008G021100.1 No alias component *(uS9) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Solyc01g068530 No alias Ribosomal protein S16 (AHRD V3.3 *** A9P8S1_POPTR) 0.11 Orthogroups_2024-Update
Solyc04g026100 No alias Ribosomal protein S16 (AHRD V3.3 *** A9P8S1_POPTR) 0.13 Orthogroups_2024-Update
Solyc05g005690 No alias Ribosomal protein S9, putative (AHRD V3.3 *** B9RYF4_RICCO) 0.09 Orthogroups_2024-Update
Sopen01g030490 No alias Ribosomal protein S9/S16 0.1 Orthogroups_2024-Update
Sopen04g014030 No alias Ribosomal protein S9/S16 0.14 Orthogroups_2024-Update
Sopen05g001690 No alias Ribosomal protein S9/S16 0.03 Orthogroups_2024-Update
evm.model.contig_435.17 No alias (at2g09990 : 160.0) Ribosomal protein S5 domain 2-like... 0.43 Orthogroups_2024-Update
evm.model.tig00000123.14 No alias (at2g09990 : 175.0) Ribosomal protein S5 domain 2-like... 0.27 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000754 Ribosomal_S9 14 146
No external refs found!