1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.E03471.1

Brara.E03471.1


Description : GARP subgroup PHL transcription factor


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E03471.1
Cluster HCAA Clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Brara.I01162.1 No alias GARP subgroup PHL transcription factor & transcription... 0.03 Orthogroups_2024-Update
GRMZM2G056400 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G113742 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G250000 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Mp4g07330.1 No alias G2-like GARP transcription factor 0.02 Orthogroups_2024-Update
PSME_00010688-RA No alias (at4g13640 : 154.0) unfertilized embryo sac 16 (UNE16);... 0.03 Orthogroups_2024-Update
Potri.002G130200 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G071700 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Sobic.005G004000.1 No alias transcription factor *(CLAUSA) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0004619 phosphoglycerate mutase activity IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
MF GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 48 99
IPR025756 Myb_CC_LHEQLE 148 193
No external refs found!