Brara.E03604.1

Description : component *(eS19) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0001908 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001908_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.E03604.1
Cluster	HCAA Clusters: Cluster_102

Target	Alias	Description	ECC score	Gene Family Method
153225	No alias	Ribosomal protein S19e family protein	0.08	Orthogroups_2024-Update
A4A49_38035	No alias	40s ribosomal protein s19-3	0.04	Orthogroups_2024-Update
A4A49_60647	No alias	40s ribosomal protein s19-3	0.05	Orthogroups_2024-Update
Bradi3g56527	No alias	Ribosomal protein S19e family protein	0.08	Orthogroups_2024-Update
Bradi4g08690	No alias	Ribosomal protein S19e family protein	0.04	Orthogroups_2024-Update
Brara.A03915.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Brara.C04231.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Cre02.g106600	No alias	Ribosomal protein S19e family protein	0.11	Orthogroups_2024-Update
Glyma.04G132900	No alias	Ribosomal protein S19e family protein	0.1	Orthogroups_2024-Update
Glyma.11G158500	No alias	Ribosomal protein S19e family protein	0.09	Orthogroups_2024-Update
Glyma.13G057500	No alias	Ribosomal protein S19e family protein	0.1	Orthogroups_2024-Update
Glyma.19G028700	No alias	Ribosomal protein S19e family protein	0.06	Orthogroups_2024-Update
HORVU5Hr1G052240.6	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Kfl00035_0260	kfl00035_0260_v1.1	(at3g02080 : 166.0) Ribosomal protein S19e family...	0.08	Orthogroups_2024-Update
MA_10427917g0010	No alias	(at3g02080 : 247.0) Ribosomal protein S19e family...	0.04	Orthogroups_2024-Update
Mp1g27380.1	No alias	component RPS19 of SSU proteome	0.08	Orthogroups_2024-Update
PSME_00007653-RA	No alias	(at5g15520 : 237.0) Ribosomal protein S19e family...	0.09	Orthogroups_2024-Update
Potri.004G118800	No alias	Ribosomal protein S19e family protein	0.03	Orthogroups_2024-Update
Potri.015G056100	No alias	Ribosomal protein S19e family protein	0.03	Orthogroups_2024-Update
Potri.017G092200	No alias	Ribosomal protein S19e family protein	0.07	Orthogroups_2024-Update
Pp1s21_363V6	No alias	40s ribosomal protein s19	0.17	Orthogroups_2024-Update
Pp1s34_111V6	No alias	40s ribosomal protein s19	0.1	Orthogroups_2024-Update
Pp1s54_217V6	No alias	40s ribosomal protein s19	0.1	Orthogroups_2024-Update
Pp1s84_153V6	No alias	40s ribosomal protein s19	0.14	Orthogroups_2024-Update
Pp1s98_182V6	No alias	40s ribosomal protein s19	0.09	Orthogroups_2024-Update
Seita.2G151200.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Seita.9G361400.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Seita.9G575800.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Sobic.001G334300.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.11	Orthogroups_2024-Update
Sobic.007G178600.1	No alias	component *(eS19) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Solyc03g115360	No alias	40S ribosomal protein S19-like (AHRD V3.3 *** Q2VCJ6_SOLTU)	0.12	Orthogroups_2024-Update
Solyc12g039120	No alias	40S ribosomal protein S19-like (AHRD V3.3 *** Q2VCJ6_SOLTU)	0.06	Orthogroups_2024-Update
Sopen03g034360	No alias	Ribosomal protein S19e	0.08	Orthogroups_2024-Update
Sopen12g019420	No alias	Ribosomal protein S19e	0.11	Orthogroups_2024-Update
evm.model.contig_3407.10	No alias	(at3g02080 : 155.0) Ribosomal protein S19e family...	0.13	Orthogroups_2024-Update
evm.model.tig00021017.6	No alias	(at3g02080 : 183.0) Ribosomal protein S19e family...	0.11	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000966	RNA 5'-end processing	IEP	Predicted GO
BP	GO:0001682	tRNA 5'-leader removal	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003743	translation initiation factor activity	IEP	Predicted GO
MF	GO:0004527	exonuclease activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
CC	GO:0030677	ribonuclease P complex	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034471	ncRNA 5'-end processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
BP	GO:0099116	tRNA 5'-end processing	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO
CC	GO:1902555	endoribonuclease complex	IEP	Predicted GO
CC	GO:1905348	endonuclease complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001266	Ribosomal_S19e	6	140

External Links

No external refs found!

Brara.E03604.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation