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  5. Brara.F00135.1

Brara.F00135.1


Description : SBP-type transcription factor


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F00135.1
Cluster HCAA Clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
A4A49_19670 No alias squamosa promoter-binding-like protein 6 0.03 Orthogroups_2024-Update
Bradi3g40030 No alias squamosa promoter binding protein-like 9 0.03 Orthogroups_2024-Update
Bradi4g34667 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 Orthogroups_2024-Update
Brara.I01777.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Cre09.g390023 No alias squamosa promoter binding protein-like 1 0.02 Orthogroups_2024-Update
GRMZM2G065451 No alias squamosa promoter binding protein-like 2 0.03 Orthogroups_2024-Update
Glyma.05G019000 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.17G080700 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.05 Orthogroups_2024-Update
HORVU1Hr1G060750.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os06g45310 No alias OsSPL11 - SBP-box gene family member, expressed 0.03 Orthogroups_2024-Update
Potri.001G055900 No alias squamosa promoter binding protein-like 2 0.04 Orthogroups_2024-Update
Solyc05g015840 No alias Squamosa promoter binding protein 13 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0031179 peptide modification IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 60 133
No external refs found!