Brara.F00343.1

Description : pre-mRNA splicing factor *(ZOP1)

Gene families : OG_42_0007273 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007273_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.F00343.1
Cluster	HCAA Clusters: Cluster_241

Target	Alias	Description	ECC score	Gene Family Method	Actions
Sobic.010G083700.1	No alias	pre-mRNA splicing factor *(ZOP1)	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	16Dec
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Predicted GO
CC	GO:0005672	transcription factor TFIIA complex	IEP	Predicted GO
CC	GO:0005778	peroxisomal membrane	IEP	Predicted GO
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Predicted GO
MF	GO:0015267	channel activity	IEP	Predicted GO
BP	GO:0016559	peroxisome fission	IEP	Predicted GO
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predicted GO
CC	GO:0031903	microbody membrane	IEP	Predicted GO
BP	GO:0035556	intracellular signal transduction	IEP	Predicted GO
CC	GO:0042579	microbody	IEP	Predicted GO
CC	GO:0044438	microbody part	IEP	Predicted GO
CC	GO:0044439	peroxisomal part	IEP	Predicted GO
BP	GO:0048285	organelle fission	IEP	Predicted GO
MF	GO:0051287	NAD binding	IEP	Predicted GO
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR013085	U1-CZ_Znf_C2H2	10	42

External Links

No external refs found!