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  5. Brara.F00407.1

Brara.F00407.1


Description : Unknown function


Gene families : OG_42_0000128 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F00407.1
Cluster HCAA Clusters: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
A4A49_37324 No alias indole-3-acetic acid-amido synthetase gh3.6 0.03 Orthogroups_2024-Update
A4A49_40489 No alias putative indole-3-acetic acid-amido synthetase gh3.9 0.03 Orthogroups_2024-Update
At2g46370 No alias Auxin-responsive GH3 family protein... 0.03 Orthogroups_2024-Update
At5g13380 No alias Auxin-responsive GH3 family protein... 0.03 Orthogroups_2024-Update
Bradi2g07227 No alias Auxin-responsive GH3 family protein 0.03 Orthogroups_2024-Update
Bradi2g20740 No alias Auxin-responsive GH3 family protein 0.02 Orthogroups_2024-Update
Brara.E01559.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Glyma.03G256200 No alias Auxin-responsive GH3 family protein 0.03 Orthogroups_2024-Update
Glyma.12G216700 No alias Auxin-responsive GH3 family protein 0.03 Orthogroups_2024-Update
Glyma.13G304000 No alias Auxin-responsive GH3 family protein 0.03 Orthogroups_2024-Update
Glyma.17G165500 No alias Auxin-responsive GH3 family protein 0.04 Orthogroups_2024-Update
Pp1s323_82V6 No alias putative auxin-responsive GH3 protein [Oryza sativa... 0.03 Orthogroups_2024-Update
Seita.2G375300.1 No alias indole-3-acetic acid-amido synthetase *(GH3) 0.04 Orthogroups_2024-Update
Sobic.009G249900.3 No alias jasmonoyl-amino acid synthetase *(JAR1) 0.05 Orthogroups_2024-Update
Solyc01g095580 No alias Auxin-responsive GH3 family protein (AHRD V3.3 *** AT2G46370.4) 0.02 Orthogroups_2024-Update
Solyc07g054580 No alias Indole-3-acetic acid-amido synthetase GH3.5, putative... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR004993 GH3 16 557
No external refs found!