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  5. Brara.F00451.1

Brara.F00451.1


Description : polygalacturonase *(PGX3-like) & EC_3.2 glycosylase


Gene families : OG_42_0002108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F00451.1
Cluster HCAA Clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
At1g48100 No alias Polygalacturonase At1g48100... 0.05 Orthogroups_2024-Update
Bradi2g11380 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G026804 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G170388 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.03G222500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G133400 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G087900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G031600 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.15G136700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G190600 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.3G300900.1 No alias polygalacturonase *(PGX3-like) & EC_3.2 glycosylase 0.05 Orthogroups_2024-Update
Solyc01g100980 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G02460.1) 0.03 Orthogroups_2024-Update
Solyc04g008230 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G48100.1) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 109 424
No external refs found!