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  5. Brara.F00483.1

Brara.F00483.1


Description : multifunctional tRNA ligase *(RLG1)


Gene families : OG_42_0005834 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005834_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F00483.1
Cluster HCAA Clusters: Cluster_255


Type GO Term Name Evidence Source
MF GO:0003972 RNA ligase (ATP) activity IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0034998 oligosaccharyltransferase I complex IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
InterPro domains Description Start Stop
IPR015965 tRNA_lig_PDEase 900 1041
No external refs found!