1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.F00557.1

Brara.F00557.1


Description : MYB class-R2R3 subgroup-1 transcription factor


Gene families : OG_42_0000002 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F00557.1
Cluster HCAA Clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
A4A49_01152 No alias transcription factor myb36 0.03 Orthogroups_2024-Update
A4A49_13374 No alias myb-related protein zm1 0.04 Orthogroups_2024-Update
A4A49_20993 No alias transcription factor myb39 0.03 Orthogroups_2024-Update
A4A49_40604 No alias transcription factor myb86 0.03 Orthogroups_2024-Update
A4A49_41919 No alias myb-related protein myb4 0.03 Orthogroups_2024-Update
At1g63910 No alias MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9SRB0] 0.03 Orthogroups_2024-Update
At2g32460 No alias Transcription factor MYB101... 0.04 Orthogroups_2024-Update
At5g06100 No alias Transcription factor MYB33... 0.03 Orthogroups_2024-Update
At5g65230 No alias Transcription factor MYB53... 0.04 Orthogroups_2024-Update
Bradi4g29796 No alias myb domain protein 20 0.03 Orthogroups_2024-Update
Brara.C02447.1 No alias MYB class-R2R3 subgroup-18 transcription factor 0.05 Orthogroups_2024-Update
Brara.E03277.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G496770 No alias myb domain protein 19 0.02 Orthogroups_2024-Update
Glyma.05G224300 No alias myb domain protein 68 0.03 Orthogroups_2024-Update
Glyma.06G103300 No alias myb domain protein 93 0.03 Orthogroups_2024-Update
Glyma.09G238800 No alias myb domain protein 30 0.04 Orthogroups_2024-Update
Glyma.15G259400 No alias myb domain protein 63 0.03 Orthogroups_2024-Update
Glyma.16G073000 No alias myb domain protein 21 0.03 Orthogroups_2024-Update
Glyma.19G248100 No alias myb domain protein 15 0.03 Orthogroups_2024-Update
Glyma.20G032900 No alias myb domain protein 106 0.03 Orthogroups_2024-Update
Glyma.20G184100 No alias myb domain protein 5 0.03 Orthogroups_2024-Update
LOC_Os01g09590 No alias myb-like DNA-binding domain containing protein,... 0.03 Orthogroups_2024-Update
LOC_Os01g19970 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g41166 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g14670 No alias ODORANT1, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g15020 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
MA_10435612g0010 No alias (at5g15310 : 300.0) Member of the R2R3 factor gene... 0.03 Orthogroups_2024-Update
MA_33964g0010 No alias (at5g16600 : 262.0) Encodes a putative transcription... 0.03 Orthogroups_2024-Update
MA_355131g0010 No alias (at3g28910 : 186.0) transcription factor myb homologue;... 0.03 Orthogroups_2024-Update
MA_460508g0010 No alias (q7xbh4|myb4_orysa : 200.0) Myb-related protein Myb4... 0.04 Orthogroups_2024-Update
MA_69407g0010 No alias "(at2g47460 : 172.0) ""MYB12 belongs to subgroup 7 of... 0.03 Orthogroups_2024-Update
MA_8356281g0010 No alias (at3g13540 : 224.0) Encodes a member of the MYB family... 0.04 Orthogroups_2024-Update
MA_9483804g0010 No alias (at5g15310 : 299.0) Member of the R2R3 factor gene... 0.03 Orthogroups_2024-Update
PSME_00012903-RA No alias (p10290|mybc_maize : 180.0) Anthocyanin regulatory C1... 0.03 Orthogroups_2024-Update
PSME_00014640-RA No alias (at3g27810 : 179.0) Encodes a member of the R2R3-MYB... 0.06 Orthogroups_2024-Update
PSME_00018495-RA No alias (at3g02940 : 176.0) Encodes a putative transcription... 0.02 Orthogroups_2024-Update
PSME_00021445-RA No alias (at1g22640 : 169.0) MYB-type transcription factor (MYB3)... 0.03 Orthogroups_2024-Update
PSME_00028312-RA No alias (at1g66230 : 243.0) Encodes a putative transcription... 0.05 Orthogroups_2024-Update
PSME_00028766-RA No alias (at3g01140 : 277.0) Encodes a MIXTA-like MYB gene NOECK... 0.03 Orthogroups_2024-Update
PSME_00036696-RA No alias (at5g16770 : 208.0) Member of the R2R3 factor gene... 0.04 Orthogroups_2024-Update
PSME_00039314-RA No alias "(at3g49690 : 223.0) ""Putative homolog of the Blind... 0.03 Orthogroups_2024-Update
PSME_00039845-RA No alias (at4g38620 : 241.0) Encodes a R2R3 MYB protein which is... 0.04 Orthogroups_2024-Update
PSME_00051224-RA No alias (at5g15310 : 212.0) Member of the R2R3 factor gene... 0.04 Orthogroups_2024-Update
PSME_00051633-RA No alias (at3g61250 : 281.0) Member of the R2R3 factor gene... 0.03 Orthogroups_2024-Update
PSME_00051726-RA No alias (at5g65790 : 233.0) Encodes a putative MYB transcription... 0.02 Orthogroups_2024-Update
PSME_00051767-RA No alias (at4g38620 : 243.0) Encodes a R2R3 MYB protein which is... 0.05 Orthogroups_2024-Update
Potri.001G336700 No alias myb domain protein 40 0.02 Orthogroups_2024-Update
Potri.002G038500 No alias myb domain protein 14 0.03 Orthogroups_2024-Update
Potri.015G067700 No alias Duplicated homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G071500 No alias myb domain protein 21 0.03 Orthogroups_2024-Update
Potri.017G099500 No alias myb domain protein 121 0.03 Orthogroups_2024-Update
Potri.019G081500 No alias myb domain protein 3 0.02 Orthogroups_2024-Update
Seita.3G051800.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.05 Orthogroups_2024-Update
Seita.4G221900.1 No alias MYB class-R2R3 subgroup-18 transcription factor 0.04 Orthogroups_2024-Update
Seita.5G286200.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.05 Orthogroups_2024-Update
Seita.5G355300.1 No alias MYB class-R2R3 subgroup-18 transcription factor 0.03 Orthogroups_2024-Update
Seita.8G153200.1 No alias MYB class-R2R3 subgroup-1 transcription factor 0.05 Orthogroups_2024-Update
Seita.8G237700.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.02 Orthogroups_2024-Update
Sobic.003G373000.1 No alias MYB class-R2R3 subgroup-4 transcription factor 0.03 Orthogroups_2024-Update
Sobic.004G219800.1 No alias MYB class-R2R3 subgroup-2 transcription factor 0.03 Orthogroups_2024-Update
Solyc03g112390 No alias R2R3MYB transcription factor 86 0.03 Orthogroups_2024-Update
Solyc05g053330 No alias MYB transcription factor (AHRD V3.3 *** Q39550_CRAPL) 0.03 Orthogroups_2024-Update
Solyc07g053230 No alias R2R3MYB transcription factor 83 0.03 Orthogroups_2024-Update
Sopen01g038150 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen02g016480 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
MF GO:0019786 Atg8-specific protease activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 14 61
IPR001005 SANT/Myb 82 105
No external refs found!