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  5. Brara.F00579.1

Brara.F00579.1


Description : clade H phosphatase


Gene families : OG_42_0000712 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000712_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F00579.1
Cluster HCAA Clusters: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
A4A49_18666 No alias putative protein phosphatase 2c 5 0.03 Orthogroups_2024-Update
GRMZM2G015610 No alias Protein phosphatase 2C family protein 0.03 Orthogroups_2024-Update
LOC_Os02g35910 No alias protein phosphotase protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00018608-RA No alias (at1g68410 : 352.0) Protein phosphatase 2C family... 0.02 Orthogroups_2024-Update
Potri.002G127300 No alias Protein phosphatase 2C family protein 0.03 Orthogroups_2024-Update
Sopen05g004800 No alias Protein phosphatase 2C 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
CC GO:0000315 organellar large ribosomal subunit IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003883 CTP synthase activity IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005762 mitochondrial large ribosomal subunit IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0048364 root development IEP Predicted GO
BP GO:0048367 shoot system development IEP Predicted GO
BP GO:0048731 system development IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
BP GO:0099402 plant organ development IEP Predicted GO
MF GO:1901981 phosphatidylinositol phosphate binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase_dom 2 142
No external refs found!