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  5. Brara.F00615.1

Brara.F00615.1


Description : component *(eL21) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0002269 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002269_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F00615.1
Cluster HCAA Clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
170832 No alias Translation protein SH3-like family protein 0.1 Orthogroups_2024-Update
A4A49_17708 No alias 60s ribosomal protein l21-2 0.06 Orthogroups_2024-Update
A4A49_24703 No alias 60s ribosomal protein l21-2 0.06 Orthogroups_2024-Update
At1g57660 No alias 60S ribosomal protein L21-2... 0.04 Orthogroups_2024-Update
Bradi1g75620 No alias Translation protein SH3-like family protein 0.03 Orthogroups_2024-Update
Bradi3g28220 No alias Translation protein SH3-like family protein 0.09 Orthogroups_2024-Update
Brara.I05254.1 No alias component *(eL21) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Brara.I05263.1 No alias component *(eL21) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Cre06.g278135 No alias Translation protein SH3-like family protein 0.11 Orthogroups_2024-Update
GRMZM2G026216 No alias Translation protein SH3-like family protein 0.03 Orthogroups_2024-Update
GRMZM2G149257 No alias Translation protein SH3-like family protein 0.1 Orthogroups_2024-Update
Glyma.03G207500 No alias Translation protein SH3-like family protein 0.11 Orthogroups_2024-Update
Glyma.06G207400 No alias Translation protein SH3-like family protein 0.03 Orthogroups_2024-Update
Glyma.19G205000 No alias Translation protein SH3-like family protein 0.13 Orthogroups_2024-Update
HORVU1Hr1G038890.1 No alias component *(eL21) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Kfl00008_0470 kfl00008_0470_v1.1 (at1g57860 : 268.0) Translation protein SH3-like family... 0.04 Orthogroups_2024-Update
LOC_Os10g32820 No alias 60S ribosomal protein L21-2, putative, expressed 0.05 Orthogroups_2024-Update
MA_40819g0010 No alias (at1g57860 : 290.0) Translation protein SH3-like family... 0.03 Orthogroups_2024-Update
Mp6g01390.1 No alias component RPL21 of LSU proteome component 0.08 Orthogroups_2024-Update
PSME_00039521-RA No alias (at1g57860 : 292.0) Translation protein SH3-like family... 0.04 Orthogroups_2024-Update
Potri.001G071100 No alias Translation protein SH3-like family protein 0.06 Orthogroups_2024-Update
Potri.003G159500 No alias Translation protein SH3-like family protein 0.05 Orthogroups_2024-Update
Potri.006G195400 No alias Translation protein SH3-like family protein 0.1 Orthogroups_2024-Update
Potri.016G061100 No alias Translation protein SH3-like family protein 0.06 Orthogroups_2024-Update
Pp1s107_181V6 No alias 60s ribosomal protein l21 0.09 Orthogroups_2024-Update
Pp1s1_780V6 No alias 60s ribosomal protein l21 0.06 Orthogroups_2024-Update
Pp1s298_23V6 No alias 60s ribosomal protein l21 0.07 Orthogroups_2024-Update
Pp1s91_107V6 No alias 60s ribosomal protein l21 0.06 Orthogroups_2024-Update
Seita.9G229600.1 No alias component *(eL21) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Seita.9G544700.1 No alias component *(eL21) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Sobic.001G226500.1 No alias component *(eL21) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Sobic.001G508900.1 No alias component *(eL21) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Solyc10g078960 No alias 60S ribosomal protein L21-like protein (AHRD V3.3 ***... 0.09 Orthogroups_2024-Update
Solyc10g080590 No alias 60S ribosomal protein L21-like protein (AHRD V3.3 ***... 0.13 Orthogroups_2024-Update
Sopen10g029590 No alias Ribosomal protein L21e 0.16 Orthogroups_2024-Update
Sopen10g031130 No alias Ribosomal protein L21e 0.14 Orthogroups_2024-Update
evm.model.contig_4456.21 No alias (at1g57860 : 119.0) Translation protein SH3-like family... 0.13 Orthogroups_2024-Update
evm.model.tig00000640.5 No alias (at1g57860 : 125.0) Translation protein SH3-like family... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001147 Ribosomal_L21e 1 101
No external refs found!