Brara.F00618.1

Description : A-class RAB GTPase

Gene families : OG_42_0000131 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000131_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.F00618.1
Cluster	HCAA Clusters: Cluster_285

Target	Alias	Description	ECC score	Gene Family Method
At1g09630	No alias	Ras-related protein RABA2a...	0.03	Orthogroups_2024-Update
Brara.J00514.1	No alias	A-class RAB GTPase	0.03	Orthogroups_2024-Update
Glyma.05G176300	No alias	RAB GTPase homolog A4A	0.04	Orthogroups_2024-Update
Glyma.19G258000	No alias	RAB GTPase homolog A3	0.03	Orthogroups_2024-Update
HORVU3Hr1G071740.1	No alias	A-class RAB GTPase	0.03	Orthogroups_2024-Update
HORVU5Hr1G120210.4	No alias	A-class RAB GTPase	0.03	Orthogroups_2024-Update
Potri.001G270100	No alias	RAB GTPase homolog A4D	0.03	Orthogroups_2024-Update
Seita.2G282900.1	No alias	A-class RAB GTPase	0.02	Orthogroups_2024-Update
Seita.3G145900.1	No alias	A-class RAB GTPase	0.03	Orthogroups_2024-Update
Sopen03g002280	No alias	Ras family	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	16Dec
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0007275	multicellular organism development	IEP	Predicted GO
MF	GO:0015276	ligand-gated ion channel activity	IEP	Predicted GO
BP	GO:0016197	endosomal transport	IEP	Predicted GO
BP	GO:0016482	cytosolic transport	IEP	Predicted GO
MF	GO:0022834	ligand-gated channel activity	IEP	Predicted GO
MF	GO:0022836	gated channel activity	IEP	Predicted GO
MF	GO:0022839	ion gated channel activity	IEP	Predicted GO
CC	GO:0030906	retromer, cargo-selective complex	IEP	Predicted GO
BP	GO:0032501	multicellular organismal process	IEP	Predicted GO
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	14	174

External Links

No external refs found!