1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.F00665.1

Brara.F00665.1


Description : regulatory protein (CIB) of blue light perception & bHLH-type transcription factor


Gene families : OG_42_0000125 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F00665.1
Cluster HCAA Clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
A4A49_19416 No alias transcription factor bhlh49 0.03 Orthogroups_2024-Update
A4A49_35201 No alias transcription factor hbi1 0.02 Orthogroups_2024-Update
At3g07340 No alias Transcription factor bHLH62... 0.03 Orthogroups_2024-Update
Bradi2g58630 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Brara.F02504.1 No alias regulatory protein (CIB) of blue light perception &... 0.03 Orthogroups_2024-Update
GRMZM2G180452 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
LOC_Os09g32510 No alias BHLH transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
Pp1s226_51V6 No alias dna binding 0.03 Orthogroups_2024-Update
Pp1s69_95V6 No alias dna binding protein 0.02 Orthogroups_2024-Update
Sobic.003G400600.1 No alias regulatory protein (CIB) of blue light perception &... 0.03 Orthogroups_2024-Update
Sobic.004G267400.1 No alias regulatory protein (CIB) of blue light perception &... 0.03 Orthogroups_2024-Update
Sopen06g034560 No alias Helix-loop-helix DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0019915 lipid storage IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 201 249
No external refs found!