1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.F00840.1

Brara.F00840.1


Description : substrate adaptor of SCF E3 ubiquitin ligase complex


Gene families : OG_42_0000800 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000800_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F00840.1
Cluster HCAA Clusters: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
A4A49_09596 No alias f-box protein pp2-a13 0.02 Orthogroups_2024-Update
At1g12710 No alias phloem protein 2-A12 [Source:TAIR;Acc:AT1G12710] 0.07 Orthogroups_2024-Update
At3g53000 No alias F-box protein PP2-A15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF92] 0.04 Orthogroups_2024-Update
At3g61060 No alias Phloem protein 2-A13 [Source:UniProtKB/TrEMBL;Acc:F4JD33] 0.03 Orthogroups_2024-Update
Bradi3g31520 No alias phloem protein 2-A13 0.02 Orthogroups_2024-Update
Brara.C01442.1 No alias substrate adaptor of SCF E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
Brara.I03598.1 No alias substrate adaptor of SCF E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update
Glyma.07G077600 No alias phloem protein 2-A13 0.03 Orthogroups_2024-Update
LOC_Os02g45320 No alias OsFBX58 - F-box domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.003G121900 No alias phloem protein 2-A12 0.03 Orthogroups_2024-Update
Sobic.001G321500.1 No alias substrate adaptor of SCF E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
Sobic.001G532000.1 No alias substrate adaptor of SCF E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
Solyc03g026160 No alias LOW QUALITY:Unknown protein (AHRD V3.3 ) 0.03 Orthogroups_2024-Update
Solyc09g008820 No alias F-box protein PP2-A13 (AHRD V3.3 *** A0A072U2Z8_MEDTR) 0.03 Orthogroups_2024-Update
Solyc12g056410 No alias F-box protein PP2-A13 (AHRD V3.3 *** P2A13_ARATH) 0.04 Orthogroups_2024-Update
Sopen12g029000 No alias Phloem protein 2 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 24 53
IPR025886 PP2-like 116 275
No external refs found!