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  5. Brara.F00949.1

Brara.F00949.1


Description : E3 ubiquitin ligase *(SNIPER)


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F00949.1
Cluster HCAA Clusters: Cluster_357

Target Alias Description ECC score Gene Family Method Actions
At3g19950 No alias RING/U-box superfamily protein... 0.03 Orthogroups_2024-Update
Glyma.20G149700 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os09g06740 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g37230 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10435153g0010 No alias (at3g19950 : 192.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Mp7g04520.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Mp7g15970.1 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 Orthogroups_2024-Update
Sobic.002G176300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G199100.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:1901981 phosphatidylinositol phosphate binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 108 150
No external refs found!