1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.F01034.1

Brara.F01034.1


Description : subfamily ABCG transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F01034.1
Cluster HCAA Clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
173584 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
441717 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
441720 No alias pleiotropic drug resistance 7 0.02 Orthogroups_2024-Update
At1g59870 No alias ABC transporter G family member 36... 0.03 Orthogroups_2024-Update
Bradi1g78752 No alias pleiotropic drug resistance 5 0.02 Orthogroups_2024-Update
Bradi4g28270 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Brara.A03065.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Cre01.g007000 No alias pleiotropic drug resistance 3 0.03 Orthogroups_2024-Update
Cre16.g655450 No alias pleiotropic drug resistance 3 0.02 Orthogroups_2024-Update
Glyma.04G069800 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Glyma.07G033500 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Glyma.19G169200 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
HORVU3Hr1G053350.8 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
LOC_Os01g08260 No alias pleiotropic drug resistance protein 4, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g43120 No alias Plant PDR ABC transporter associated domain containing... 0.02 Orthogroups_2024-Update
LOC_Os10g13830 No alias pleiotropic drug resistance protein 13, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g32820 No alias pleiotropic drug resistance protein 3, putative, expressed 0.03 Orthogroups_2024-Update
MA_17319g0020 No alias (q76cu2|pdr1_tobac : 630.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
MA_173274g0010 No alias (q5z9s8|pdr12_orysa : 429.0) Pleiotropic drug resistance... 0.04 Orthogroups_2024-Update
PSME_00001268-RA No alias (at1g59870 : 1834.0) ATP binding cassette transporter.... 0.03 Orthogroups_2024-Update
PSME_00003090-RA No alias (at1g59870 : 811.0) ATP binding cassette transporter.... 0.03 Orthogroups_2024-Update
PSME_00015316-RA No alias (q2pcf1|pdr2_nicpl : 1867.0) Pleiotropic drug resistance... 0.05 Orthogroups_2024-Update
PSME_00015395-RA No alias (q76cu2|pdr1_tobac : 1904.0) Pleiotropic drug resistance... 0.04 Orthogroups_2024-Update
Potri.003G179000 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Pp1s12_29V6 No alias atp-binding cassette 0.03 Orthogroups_2024-Update
Pp1s72_306V6 No alias atp-binding cassette 0.02 Orthogroups_2024-Update
Seita.2G162400.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Seita.2G179600.1 No alias subfamily ABCG transporter 0.06 Orthogroups_2024-Update
Seita.4G181500.1 No alias subfamily ABCG transporter 0.06 Orthogroups_2024-Update
Seita.5G221600.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Seita.5G221700.1 No alias subfamily ABCG transporter 0.05 Orthogroups_2024-Update
Sobic.003G215800.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Sobic.003G216166.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Sobic.003G216232.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Solyc03g120980 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc09g091670 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen05g032100 No alias ABC-2 type transporter 0.03 Orthogroups_2024-Update
Sopen05g032120 No alias ABC-2 type transporter 0.03 Orthogroups_2024-Update
Sopen08g021560 No alias ABC-2 type transporter 0.04 Orthogroups_2024-Update
evm.model.tig00021489.3 No alias (at3g21090 : 172.0) ABC-2 type transporter family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 491 703
IPR003439 ABC_transporter-like 193 345
IPR013581 PDR_assoc 70 133
No external refs found!