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  5. Brara.F01068.1

Brara.F01068.1


Description : subfamily ABCG transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F01068.1
Cluster HCAA Clusters: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
412710 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
415867 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
441717 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
441720 No alias pleiotropic drug resistance 7 0.04 Orthogroups_2024-Update
At2g37280 No alias pleiotropic drug resistance 5 [Source:TAIR;Acc:AT2G37280] 0.03 Orthogroups_2024-Update
Brara.A03065.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Brara.C01827.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
GRMZM2G143139 No alias pleiotropic drug resistance 12 0.04 Orthogroups_2024-Update
Glyma.04G069800 No alias pleiotropic drug resistance 12 0.04 Orthogroups_2024-Update
Glyma.13G355000 No alias ABC-2 and Plant PDR ABC-type transporter family protein 0.03 Orthogroups_2024-Update
Glyma.13G361900 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Glyma.18G063400 No alias pleiotropic drug resistance 3 0.03 Orthogroups_2024-Update
Glyma.19G169200 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
HORVU3Hr1G071470.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
LOC_Os01g08260 No alias pleiotropic drug resistance protein 4, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os12g13720 No alias Plant PDR ABC transporter associated domain containing... 0.02 Orthogroups_2024-Update
MA_10426781g0010 No alias (at2g36380 : 1292.0) pleiotropic drug resistance 6... 0.03 Orthogroups_2024-Update
MA_10427561g0010 No alias (q8gu88|pdr7_orysa : 1276.0) Putative pleiotropic drug... 0.03 Orthogroups_2024-Update
MA_10427683g0010 No alias (at1g59870 : 1105.0) ATP binding cassette transporter.... 0.04 Orthogroups_2024-Update
MA_12965g0010 No alias (q949g3|pdr1_nicpl : 544.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
MA_173274g0010 No alias (q5z9s8|pdr12_orysa : 429.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
PSME_00001267-RA No alias (q5z9s8|pdr12_orysa : 1556.0) Pleiotropic drug... 0.03 Orthogroups_2024-Update
PSME_00002220-RA No alias (q5z9s8|pdr12_orysa : 1203.0) Pleiotropic drug... 0.02 Orthogroups_2024-Update
PSME_00009192-RA No alias (q8gu88|pdr7_orysa : 1875.0) Putative pleiotropic drug... 0.03 Orthogroups_2024-Update
PSME_00010410-RA No alias (q8gu88|pdr7_orysa : 1693.0) Putative pleiotropic drug... 0.05 Orthogroups_2024-Update
PSME_00012870-RA No alias (q76cu2|pdr1_tobac : 1718.0) Pleiotropic drug resistance... 0.05 Orthogroups_2024-Update
PSME_00013320-RA No alias (q8gu88|pdr7_orysa : 1886.0) Putative pleiotropic drug... 0.05 Orthogroups_2024-Update
PSME_00013643-RA No alias (q76cu2|pdr1_tobac : 1408.0) Pleiotropic drug resistance... 0.05 Orthogroups_2024-Update
PSME_00014724-RA No alias (q76cu2|pdr1_tobac : 1860.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
PSME_00015395-RA No alias (q76cu2|pdr1_tobac : 1904.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
PSME_00019551-RA No alias (q76cu2|pdr1_tobac : 1217.0) Pleiotropic drug resistance... 0.02 Orthogroups_2024-Update
Potri.003G179000 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Potri.008G024400 No alias pleiotropic drug resistance 11 0.03 Orthogroups_2024-Update
Seita.1G041000.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Seita.2G162400.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Seita.2G179600.1 No alias subfamily ABCG transporter 0.05 Orthogroups_2024-Update
Seita.5G221500.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Seita.9G187800.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Sobic.003G216166.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Sobic.003G216232.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Solyc12g100180 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc12g100190 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.04 Orthogroups_2024-Update
Sopen11g003170 No alias ABC-2 type transporter 0.02 Orthogroups_2024-Update
Sopen11g003190 No alias ABC-2 type transporter 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 1140 1354
IPR013525 ABC_2_trans 505 715
IPR029481 ABC_trans_N 91 142
IPR003439 ABC_transporter-like 167 349
IPR013581 PDR_assoc 720 782
IPR003439 ABC_transporter-like 843 995
No external refs found!