1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.F01158.1

Brara.F01158.1


Description : mRNA decay factor *(PAT1)


Gene families : OG_42_0001618 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F01158.1
Cluster HCAA Clusters: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
A4A49_17450 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Bradi2g20210 No alias Topoisomerase II-associated protein PAT1 0.04 Orthogroups_2024-Update
Bradi2g51080 No alias Topoisomerase II-associated protein PAT1 0.04 Orthogroups_2024-Update
Brara.A02021.1 No alias mRNA decay factor *(PAT1) 0.03 Orthogroups_2024-Update
GRMZM2G011079 No alias Function unknown 0.05 Orthogroups_2024-Update
Mp4g14040.1 No alias mRNA decay factor (PAT1) 0.02 Orthogroups_2024-Update
Pp1s16_396V6 No alias hypothetical protein similar to Arabidopsis thaliana... 0.03 Orthogroups_2024-Update
Seita.5G014000.1 No alias mRNA decay factor *(PAT1) 0.04 Orthogroups_2024-Update
Sobic.003G309200.1 No alias mRNA decay factor *(PAT1) 0.01 Orthogroups_2024-Update
Solyc12g017260 No alias Topoisomerase II-associated protein PAT1 (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen12g002360 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen12g008080 No alias Topoisomerase II-associated protein PAT1 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005778 peroxisomal membrane IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
CC GO:0031903 microbody membrane IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!