At2g19750

Description : 40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]

Gene families : OG_42_0002853 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002853_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At2g19750
Cluster	HCCA clusters: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g48060	No alias	Ribosomal protein S30 family protein	0.04	Orthogroups_2024-Update
Brara.A00791.1	No alias	component *(eS30) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Brara.C01230.1	No alias	component *(eS30) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Brara.I04721.1	No alias	component *(eS30) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.J01095.1	No alias	component *(eS30) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Cre16.g666301	No alias	Ribosomal protein S30 family protein	0.09	Orthogroups_2024-Update
GRMZM2G054012	No alias	Ribosomal protein S30 family protein	0.07	Orthogroups_2024-Update
LOC_Os06g07580	No alias	expressed protein	0.03	Orthogroups_2024-Update
MA_10432727g0010	No alias	(at5g56670 : 97.4) Ribosomal protein S30 family protein;...	0.03	Orthogroups_2024-Update
Mp2g24290.1	No alias	component RPS30 of SSU proteome	0.02	Orthogroups_2024-Update
Mp8g09080.1	No alias	component RPS30 of SSU proteome	0.03	Orthogroups_2024-Update
PSME_00048165-RA	No alias	no hits & (original description: no original description)	0.05	Orthogroups_2024-Update
Potri.014G147200	No alias	Ribosomal protein S30 family protein	0.03	Orthogroups_2024-Update
Potri.015G084700	No alias	Ribosomal protein S30 family protein	0.08	Orthogroups_2024-Update
Pp1s22_155V6	No alias	40s ribosomal protein s30	0.03	Orthogroups_2024-Update
Pp1s22_171V6	No alias	40s ribosomal protein s30	0.03	Orthogroups_2024-Update
Pp1s283_53V6	No alias	40s ribosomal protein s30	0.06	Orthogroups_2024-Update
Pp1s97_259V6	No alias	40s ribosomal protein s30	0.02	Orthogroups_2024-Update
Sobic.010G057100.1	No alias	component *(eS30) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
Solyc08g076340	No alias	40S ribosomal protein S30 (AHRD V3.3 *** W9QWZ6_9ROSA)	0.04	Orthogroups_2024-Update
Solyc12g008700	No alias	peroxisomal ABC transporter 1 (AHRD V3.3 --* AT4G39850.4)	0.06	Orthogroups_2024-Update
evm.model.tig00001003.33	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Predicted GO
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
BP	GO:0001510	RNA methylation	IEP	Predicted GO
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
MF	GO:0008649	rRNA methyltransferase activity	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016435	rRNA (guanine) methyltransferase activity	IEP	Predicted GO
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
BP	GO:0031167	rRNA methylation	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0036265	RNA (guanine-N7)-methylation	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO
BP	GO:0070475	rRNA base methylation	IEP	Predicted GO
BP	GO:0070476	rRNA (guanine-N7)-methylation	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006846	Ribosomal_S30	3	59

External Links

No external refs found!

At2g19750

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation