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  5. Brara.F01460.1

Brara.F01460.1


Description : OPC-8


Gene families : OG_42_0000133 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000133_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F01460.1
Cluster HCAA Clusters: Cluster_404

Target Alias Description ECC score Gene Family Method Actions
173133 No alias 4-coumarate:CoA ligase 3 0.03 Orthogroups_2024-Update
At1g20510 No alias 4-coumarate--CoA ligase-like 5... 0.03 Orthogroups_2024-Update
At5g38120 No alias 4-coumarate--CoA ligase-like 8... 0.02 Orthogroups_2024-Update
Bradi4g19947 No alias AMP-dependent synthetase and ligase family protein 0.02 Orthogroups_2024-Update
Brara.H02328.1 No alias OPC-8 0.04 Orthogroups_2024-Update
Glyma.11G091600 No alias 4-coumarate:CoA ligase 3 0.03 Orthogroups_2024-Update
HORVU7Hr1G111130.3 No alias p-coumarate 0.03 Orthogroups_2024-Update
MA_633407g0010 No alias (o24145|4cl1_tobac : 656.0) 4-coumarate--CoA ligase 1... 0.03 Orthogroups_2024-Update
PSME_00015569-RA No alias (o24146|4cl2_tobac : 689.0) 4-coumarate--CoA ligase 2... 0.03 Orthogroups_2024-Update
Potri.012G094800 No alias AMP-dependent synthetase and ligase family protein 0.03 Orthogroups_2024-Update
Pp1s71_170V6 No alias 4-coumarate: ligase 0.02 Orthogroups_2024-Update
Seita.4G191500.1 No alias p-coumarate 0.02 Orthogroups_2024-Update
Sobic.001G187000.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc02g088710 No alias 4-coumarate:CoA ligase-like (AHRD V3.3 *** Q84K86_NICSY) 0.02 Orthogroups_2024-Update
Sopen03g036780 No alias AMP-binding enzyme 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008200 ion channel inhibitor activity IEP Predicted GO
MF GO:0016247 channel regulator activity IEP Predicted GO
MF GO:0016248 channel inhibitor activity IEP Predicted GO
MF GO:0017080 sodium channel regulator activity IEP Predicted GO
MF GO:0019871 sodium channel inhibitor activity IEP Predicted GO
MF GO:0099106 ion channel regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig 46 450
IPR025110 AMP-bd_C 459 534
No external refs found!