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  5. Brara.F01639.1

Brara.F01639.1


Description : EC_3.2 glycosylase


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F01639.1
Cluster HCAA Clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
A4A49_18383 No alias putative polygalacturonase 0.02 Orthogroups_2024-Update
Bradi3g09597 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.A01357.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
GRMZM2G119494 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os01g43160 No alias polygalacturonase, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g26800 No alias polygalacturonase, putative, expressed 0.04 Orthogroups_2024-Update
PSME_00010163-RA No alias (at4g33440 : 530.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.005G063400 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.007G105800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G211500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s16_66V6 No alias polygalacturonase 0.02 Orthogroups_2024-Update
Sobic.010G005000.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Sopen06g004420 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update
Sopen08g030460 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update
Sopen09g030250 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 141 424
No external refs found!