1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.F02019.1

Brara.F02019.1


Description : component *(Sec24) of Sec23/24 cargo adaptor subcomplex


Gene families : OG_42_0001342 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001342_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F02019.1
Cluster HCAA Clusters: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Bradi4g19130 No alias clone eighty-four 0.04 Orthogroups_2024-Update
HORVU4Hr1G016640.2 No alias component *(Sec24) of Sec23/24 cargo adaptor subcomplex 0.03 Orthogroups_2024-Update
Mp7g13560.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA 16Dec
BP GO:0006888 ER to Golgi vesicle-mediated transport IEA 16Dec
MF GO:0008270 zinc ion binding IEA 16Dec
CC GO:0030127 COPII vesicle coat IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003876 AMP deaminase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0007155 cell adhesion IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0022610 biological adhesion IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
BP GO:0032261 purine nucleotide salvage IEP Predicted GO
BP GO:0032264 IMP salvage IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043094 cellular metabolic compound salvage IEP Predicted GO
BP GO:0043101 purine-containing compound salvage IEP Predicted GO
BP GO:0043173 nucleotide salvage IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
MF GO:0047623 adenosine-phosphate deaminase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR006895 Znf_Sec23_Sec24 386 424
IPR012990 Sec23_24_beta_S 706 789
IPR006896 Sec23/24_trunk_dom 461 701
IPR006900 Sec23/24_helical_dom 801 897
IPR007123 Gelsolin-like_dom 921 980
No external refs found!