Description : pre-60S ribosomal subunit assembly factor *(SSF1)
Gene families : OG_42_0005553 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005553_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.F02052.1 | |
Cluster | HCAA Clusters: Cluster_181 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At5g61770 | No alias | PETER PAN-like protein [Source:UniProtKB/TrEMBL;Acc:F4K3M1] | 0.05 | Orthogroups_2024-Update | |
Bradi1g62800 | No alias | PETER PAN-like protein | 0.14 | Orthogroups_2024-Update | |
Cre10.g450879 | No alias | PETER PAN-like protein | 0.02 | Orthogroups_2024-Update | |
Mp6g06030.1 | No alias | pre-60S ribosomal subunit assembly factor (SSF1) | 0.05 | Orthogroups_2024-Update | |
Potri.002G204900 | No alias | PETER PAN-like protein | 0.04 | Orthogroups_2024-Update | |
Pp1s22_59V6 | No alias | MAC9.8; Peter Pan - like protein [Arabidopsis thaliana] | 0.03 | Orthogroups_2024-Update | |
Seita.9G408900.1 | No alias | pre-60S ribosomal subunit assembly factor *(SSF1) | 0.15 | Orthogroups_2024-Update | |
Sobic.001G376400.1 | No alias | pre-60S ribosomal subunit assembly factor *(SSF1) | 0.08 | Orthogroups_2024-Update | |
Solyc01g096800 | No alias | PETER PAN-like protein (AHRD V3.3 *** AT5G61770.3) | 0.13 | Orthogroups_2024-Update | |
evm.model.contig_4461.11 | No alias | (at5g61770 : 211.0) PETER PAN-like protein (PPAN);... | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00020912.43 | No alias | (at5g61770 : 80.1) PETER PAN-like protein (PPAN);... | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00020912.51 | No alias | (at5g61770 : 257.0) PETER PAN-like protein (PPAN);... | 0.09 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006364 | rRNA processing | IEA | 16Dec |
MF | GO:0019843 | rRNA binding | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predicted GO |
CC | GO:0005634 | nucleus | IEP | Predicted GO |
CC | GO:0005730 | nucleolus | IEP | Predicted GO |
CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Predicted GO |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
BP | GO:0006260 | DNA replication | IEP | Predicted GO |
MF | GO:0008134 | transcription factor binding | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | Predicted GO |
MF | GO:0030515 | snoRNA binding | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
MF | GO:0031072 | heat shock protein binding | IEP | Predicted GO |
CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
CC | GO:0034457 | Mpp10 complex | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
CC | GO:0044428 | nuclear part | IEP | Predicted GO |
CC | GO:0044452 | nucleolar part | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007109 | Brix | 46 | 288 |
No external refs found! |