1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.F02117.1

Brara.F02117.1


Description : component *(CAP-E2/SMC2) of condensin I/II complex


Gene families : OG_42_0005833 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005833_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F02117.1
Cluster HCAA Clusters: Cluster_254

Target Alias Description ECC score Gene Family Method Actions
137981 No alias Structural maintenance of chromosomes (SMC) family protein 0.02 Orthogroups_2024-Update
Cre02.g086650 No alias structural maintenance of chromosomes 2 0.02 Orthogroups_2024-Update
Glyma.13G202100 No alias structural maintenance of chromosomes 2 0.02 Orthogroups_2024-Update
HORVU3Hr1G088700.2 No alias component *(CAP-E2/SMC2) of condensin I/II complex 0.05 Orthogroups_2024-Update
Kfl00001_0690 kfl00001_0690_v1.1 (at5g62410 : 1028.0) SMC2-1 (SMC2); structural... 0.02 Orthogroups_2024-Update
Solyc03g093250 No alias Structural maintenance of chromosomes protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc03g093260 No alias Structural maintenance of chromosomes protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Sopen03g024050 No alias RecF/RecN/SMC N terminal domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0005694 chromosome IEA 16Dec
BP GO:0051276 chromosome organization IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR010935 SMC_hinge 518 638
IPR003395 RecF/RecN/SMC_N 2 1161
No external refs found!