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  5. Brara.F02165.1

Brara.F02165.1


Description : E2 ubiquitin-conjugating enzyme *(UBC1)


Gene families : OG_42_0001249 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001249_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F02165.1
Cluster HCAA Clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Brara.B03823.1 No alias E2 ubiquitin-conjugating enzyme *(UBC1) 0.03 Orthogroups_2024-Update
Brara.I04992.1 No alias E2 ubiquitin-conjugating enzyme *(UBC1) 0.04 Orthogroups_2024-Update
HORVU1Hr1G027600.1 No alias E2 ubiquitin-conjugating enzyme *(UBC1) 0.03 Orthogroups_2024-Update
LOC_Os03g57790 No alias ubiquitin-conjugating enzyme, putative, expressed 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 3 128
No external refs found!