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  5. Brara.F02572.1

Brara.F02572.1


Description : circadian clock repression factor *(CHE) & TCP-type transcription factor


Gene families : OG_42_0000261 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000261_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F02572.1
Cluster HCAA Clusters: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
438214 No alias TCP family transcription factor 0.03 Orthogroups_2024-Update
Glyma.01G045500 No alias TCP family transcription factor 0.03 Orthogroups_2024-Update
Potri.016G094800 No alias TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 0.03 Orthogroups_2024-Update
Seita.1G319500.1 No alias TCP-type transcription factor 0.03 Orthogroups_2024-Update
Sopen01g003750 No alias TCP family transcription factor 0.03 Orthogroups_2024-Update
Sopen06g023690 No alias TCP family transcription factor 0.03 Orthogroups_2024-Update
Sopen08g028510 No alias TCP family transcription factor 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
BP GO:0006353 DNA-templated transcription, termination IEP Predicted GO
BP GO:0006382 adenosine to inosine editing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Predicted GO
MF GO:0008252 nucleotidase activity IEP Predicted GO
MF GO:0008253 5'-nucleotidase activity IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009264 deoxyribonucleotide catabolic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
BP GO:0016553 base conversion or substitution editing IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 44 191
No external refs found!