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  5. Brara.F02574.1

Brara.F02574.1


Description : cofactor of plastid-encoded RNA polymerase *(PAP4/FSD3) & iron superoxide dismutase *(FSD)


Gene families : OG_42_0002254 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002254_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F02574.1
Cluster HCAA Clusters: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Bradi1g50550 No alias Fe superoxide dismutase 2 0.06 Orthogroups_2024-Update
Bradi1g51140 No alias Fe superoxide dismutase 3 0.03 Orthogroups_2024-Update
GRMZM5G864424 No alias Fe superoxide dismutase 3 0.04 Orthogroups_2024-Update
Potri.005G089600 No alias Fe superoxide dismutase 3 0.05 Orthogroups_2024-Update
Seita.4G031200.1 No alias cofactor of plastid-encoded RNA polymerase *(PAP4/FSD3)... 0.05 Orthogroups_2024-Update
Seita.9G123900.1 No alias iron superoxide dismutase *(FSD) 0.06 Orthogroups_2024-Update
Sobic.010G012900.1 No alias iron superoxide dismutase *(FSD) 0.05 Orthogroups_2024-Update
Sobic.010G033000.1 No alias cofactor of plastid-encoded RNA polymerase *(PAP4/FSD3)... 0.02 Orthogroups_2024-Update
Solyc02g021140 No alias Superoxide dismutase (AHRD V3.3 *** K4B4W4_SOLLC) 0.05 Orthogroups_2024-Update
Solyc03g095180 No alias Superoxide dismutase (AHRD V3.3 *** Q7YK44_SOLLC) 0.05 Orthogroups_2024-Update
Sopen02g005460 No alias Iron/manganese superoxide dismutases, C-terminal domain 0.02 Orthogroups_2024-Update
Sopen03g025180 No alias Iron/manganese superoxide dismutases, C-terminal domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004784 superoxide dismutase activity IEA 16Dec
BP GO:0006801 superoxide metabolic process IEA 16Dec
MF GO:0046872 metal ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004418 hydroxymethylbilane synthase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006353 DNA-templated transcription, termination IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0030150 protein import into mitochondrial matrix IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0065002 intracellular protein transmembrane transport IEP Predicted GO
BP GO:0070585 protein localization to mitochondrion IEP Predicted GO
BP GO:0071806 protein transmembrane transport IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0098799 outer mitochondrial membrane protein complex IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR019831 Mn/Fe_SOD_N 50 135
IPR019832 Mn/Fe_SOD_C 142 244
No external refs found!