1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.F02701.1

Brara.F02701.1


Description : clade F phosphatase


Gene families : OG_42_0000194 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000194_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F02701.1
Cluster HCAA Clusters: Cluster_308

Target Alias Description ECC score Gene Family Method Actions
A4A49_33751 No alias putative protein phosphatase 2c 58 0.03 Orthogroups_2024-Update
A4A49_35239 No alias putative protein phosphatase 2c 39 0.02 Orthogroups_2024-Update
At5g24940 No alias Probable protein phosphatase 2C 71... 0.03 Orthogroups_2024-Update
Brara.I02375.1 No alias clade F phosphatase 0.03 Orthogroups_2024-Update
MA_174291g0010 No alias (at4g28400 : 276.0) Protein phosphatase 2C family... 0.03 Orthogroups_2024-Update
PSME_00001309-RA No alias (at1g22280 : 382.0) Encodes a phytochrome-associated... 0.03 Orthogroups_2024-Update
PSME_00042484-RA No alias (at5g53140 : 189.0) Protein phosphatase 2C family... 0.03 Orthogroups_2024-Update
Potri.002G097200 No alias Protein phosphatase 2C family protein 0.03 Orthogroups_2024-Update
Seita.1G088700.1 No alias clade F phosphatase 0.03 Orthogroups_2024-Update
Seita.8G051000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G051200.1 No alias EC_2.7 transferase transferring phosphorus-containing group 0.03 Orthogroups_2024-Update
Sobic.004G041500.1 No alias clade F phosphatase 0.02 Orthogroups_2024-Update
Sopen03g003240 No alias Protein phosphatase 2C 0.03 Orthogroups_2024-Update
Sopen07g027740 No alias Protein phosphatase 2C 0.03 Orthogroups_2024-Update
evm.model.contig_3479.1 No alias (at1g07160 : 146.0) Protein phosphatase 2C family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase_dom 62 272
No external refs found!