Brara.F02849.1

Description : component *(eS21) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0002517 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002517_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.F02849.1
Cluster	HCAA Clusters: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
271040	No alias	Ribosomal protein S21e	0.09	Orthogroups_2024-Update
Bradi1g62691	No alias	Ribosomal protein S21e	0.14	Orthogroups_2024-Update
Brara.D00506.1	No alias	component *(eS21) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Brara.I03670.1	No alias	component *(eS21) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Cre03.g203450	No alias	Ribosomal protein S21e	0.05	Orthogroups_2024-Update
GRMZM2G093574	No alias	Ribosomal protein S21e	0.04	Orthogroups_2024-Update
GRMZM2G134109	No alias	Ribosomal protein S21e	0.03	Orthogroups_2024-Update
Glyma.09G045000	No alias	Ribosomal protein S21e	0.05	Orthogroups_2024-Update
Glyma.15G147700	No alias	Ribosomal protein S21e	0.08	Orthogroups_2024-Update
Kfl00268_0170	kfl00268_0170_v1.1	(p35687\|rs21_orysa : 140.0) 40S ribosomal protein S21 -...	0.1	Orthogroups_2024-Update
MA_21647g0010	No alias	(at5g27700 : 150.0) Ribosomal protein S21e ; FUNCTIONS...	0.07	Orthogroups_2024-Update
MA_73657g0010	No alias	(at5g27700 : 114.0) Ribosomal protein S21e ; FUNCTIONS...	0.05	Orthogroups_2024-Update
Mp4g22150.1	No alias	component RPS21 of SSU proteome	0.03	Orthogroups_2024-Update
PSME_00047574-RA	No alias	(at5g27700 : 115.0) Ribosomal protein S21e ; FUNCTIONS...	0.06	Orthogroups_2024-Update
Potri.005G026000	No alias	Ribosomal protein S21e	0.05	Orthogroups_2024-Update
Potri.013G017600	No alias	Ribosomal protein S21e	0.08	Orthogroups_2024-Update
Pp1s306_29V6	No alias	40s ribosomal protein	0.12	Orthogroups_2024-Update
Pp1s372_10V6	No alias	40s ribosomal protein	0.21	Orthogroups_2024-Update
Pp1s73_165V6	No alias	40s ribosomal protein	0.12	Orthogroups_2024-Update
Seita.9G131800.1	No alias	component *(eS21) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Seita.9G407100.1	No alias	component *(eS21) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Sobic.001G130301.1	No alias	component *(eS21) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Sobic.001G374700.2	No alias	component *(eS21) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Solyc01g066840	No alias	40S ribosomal protein S21 (AHRD V3.3 *** A0A0V0GU27_SOLCH)	0.17	Orthogroups_2024-Update
Sopen01g028440	No alias	Ribosomal protein S21e	0.09	Orthogroups_2024-Update
evm.model.contig_2342.3	No alias	(p35687\|rs21_orysa : 96.3) 40S ribosomal protein S21 -...	0.13	Orthogroups_2024-Update
evm.model.tig00020780.14	No alias	(at5g27700 : 110.0) Ribosomal protein S21e ; FUNCTIONS...	0.07	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predicted GO
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predicted GO
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predicted GO
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0004527	exonuclease activity	IEP	Predicted GO
CC	GO:0005681	spliceosomal complex	IEP	Predicted GO
BP	GO:0006606	protein import into nucleus	IEP	Predicted GO
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Predicted GO
BP	GO:0017038	protein import	IEP	Predicted GO
BP	GO:0034504	protein localization to nucleus	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Predicted GO
BP	GO:0051169	nuclear transport	IEP	Predicted GO
BP	GO:0051170	import into nucleus	IEP	Predicted GO
MF	GO:0061608	nuclear import signal receptor activity	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0140104	molecular carrier activity	IEP	Predicted GO
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001931	Ribosomal_S21e	1	77

External Links

No external refs found!

Brara.F02849.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation