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  5. Brara.F02971.1

Brara.F02971.1


Description : RNA editing factor *(LPA66)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F02971.1
Cluster HCAA Clusters: Cluster_392

Target Alias Description ECC score Gene Family Method Actions
51483 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
At3g15930 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Orthogroups_2024-Update
Bradi2g45250 No alias mitochondrial RNAediting factor 1 0.03 Orthogroups_2024-Update
Bradi3g41651 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.09G286100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
MA_122546g0010 No alias (at3g13770 : 499.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
MA_177230g0010 No alias (at2g22070 : 585.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_66417g0010 No alias (at2g22070 : 634.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00056623-RA No alias (at2g03880 : 555.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
Sobic.008G147400.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g079380 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Predicted GO
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 211 239
IPR002885 Pentatricopeptide_repeat 242 269
IPR002885 Pentatricopeptide_repeat 415 440
IPR002885 Pentatricopeptide_repeat 88 139
IPR002885 Pentatricopeptide_repeat 340 388
IPR032867 DYW_dom 556 648
No external refs found!