Brara.F02982.1

Description : component *(uL13) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0002020 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002020_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.F02982.1
Cluster	HCAA Clusters: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
166650	No alias	Ribosomal protein L13 family protein	0.16	Orthogroups_2024-Update
A4A49_14824	No alias	60s ribosomal protein l13a-4	0.06	Orthogroups_2024-Update
A4A49_55645	No alias	60s ribosomal protein l13a-4	0.17	Orthogroups_2024-Update
At3g07110	No alias	Ribosomal protein L13 family protein...	0.03	Orthogroups_2024-Update
At3g24830	No alias	60S ribosomal protein L13a-2...	0.05	Orthogroups_2024-Update
At4g13170	No alias	60S ribosomal protein L13a-3...	0.12	Orthogroups_2024-Update
Bradi1g08260	No alias	Ribosomal protein L13 family protein	0.19	Orthogroups_2024-Update
Bradi1g59280	No alias	Ribosomal protein L13 family protein	0.1	Orthogroups_2024-Update
Brara.B03455.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.18	Orthogroups_2024-Update
Brara.C03976.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Brara.G00660.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.32	Orthogroups_2024-Update
Cre12.g532550	No alias	Ribosomal protein L13 family protein	0.3	Orthogroups_2024-Update
Glyma.08G353900	No alias	Ribosomal protein L13 family protein	0.09	Orthogroups_2024-Update
Glyma.08G354000	No alias	Ribosomal protein L13 family protein	0.16	Orthogroups_2024-Update
Glyma.09G024000	No alias	Ribosomal protein L13 family protein	0.27	Orthogroups_2024-Update
Glyma.16G092800	No alias	Ribosomal protein L13 family protein	0.06	Orthogroups_2024-Update
HORVU2Hr1G063880.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
HORVU5Hr1G096060.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.18	Orthogroups_2024-Update
Kfl00360_0020	kfl00360_0020_v1.1	(at3g07110 : 303.0) Ribosomal protein L13 family...	0.07	Orthogroups_2024-Update
LOC_Os03g54890	No alias	ribosomal protein L13, putative, expressed	0.03	Orthogroups_2024-Update
MA_186340g0010	No alias	(at3g24830 : 331.0) Ribosomal protein L13 family...	0.11	Orthogroups_2024-Update
Mp2g08690.1	No alias	component RPL13a of LSU proteome component	0.1	Orthogroups_2024-Update
Mp4g15790.1	No alias	component RPL13a of LSU proteome component	0.06	Orthogroups_2024-Update
PSME_00002229-RA	No alias	(at3g24830 : 323.0) Ribosomal protein L13 family...	0.13	Orthogroups_2024-Update
Potri.002G242600	No alias	Ribosomal protein L13 family protein	0.17	Orthogroups_2024-Update
Potri.017G054600	No alias	Ribosomal protein L13 family protein	0.04	Orthogroups_2024-Update
Pp1s165_40V6	No alias	60s ribosomal protein	0.32	Orthogroups_2024-Update
Pp1s174_48V6	No alias	60s ribosomal protein	0.33	Orthogroups_2024-Update
Pp1s63_162V6	No alias	60s ribosomal protein	0.26	Orthogroups_2024-Update
Pp1s75_223V6	No alias	60s ribosomal protein	0.1	Orthogroups_2024-Update
Pp1s80_110V6	No alias	60s ribosomal protein	0.31	Orthogroups_2024-Update
Seita.9G087700.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.29	Orthogroups_2024-Update
Sobic.001G085400.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.34	Orthogroups_2024-Update
Sobic.009G022400.1	No alias	component *(uL13) of large ribosomal-subunit (LSU) proteome	0.33	Orthogroups_2024-Update
Solyc05g053670	No alias	60S ribosomal protein L13a-like protein (AHRD V3.3 ***...	0.3	Orthogroups_2024-Update
Solyc09g091740	No alias	60S ribosomal protein L13a-like protein (AHRD V3.3 ***...	0.3	Orthogroups_2024-Update
Solyc12g098330	No alias	60S ribosomal protein L13a-like protein (AHRD V3.3 ***...	0.27	Orthogroups_2024-Update
Sopen05g032170	No alias	Ribosomal protein L13	0.4	Orthogroups_2024-Update
Sopen09g034630	No alias	Ribosomal protein L13	0.37	Orthogroups_2024-Update
Sopen12g033110	No alias	Ribosomal protein L13	0.26	Orthogroups_2024-Update
evm.model.contig_3478.11	No alias	(at3g24830 : 235.0) Ribosomal protein L13 family...	0.33	Orthogroups_2024-Update
evm.model.tig00000792.29	No alias	(at3g24830 : 242.0) Ribosomal protein L13 family...	0.09	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0003937	IMP cyclohydrolase activity	IEP	Predicted GO
MF	GO:0004017	adenylate kinase activity	IEP	Predicted GO
MF	GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	IEP	Predicted GO
MF	GO:0004643	phosphoribosylaminoimidazolecarboxamide formyltransferase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
BP	GO:0006163	purine nucleotide metabolic process	IEP	Predicted GO
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0006188	IMP biosynthetic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0009117	nucleotide metabolic process	IEP	Predicted GO
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Predicted GO
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Predicted GO
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Predicted GO
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Predicted GO
BP	GO:0009165	nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Predicted GO
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009259	ribonucleotide metabolic process	IEP	Predicted GO
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	Predicted GO
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Predicted GO
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Predicted GO
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predicted GO
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Predicted GO
MF	GO:0016842	amidine-lyase activity	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
MF	GO:0019238	cyclohydrolase activity	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
BP	GO:0019637	organophosphate metabolic process	IEP	Predicted GO
BP	GO:0019693	ribose phosphate metabolic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0046040	IMP metabolic process	IEP	Predicted GO
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	Predicted GO
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Predicted GO
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Predicted GO
BP	GO:0072521	purine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0090407	organophosphate biosynthetic process	IEP	Predicted GO
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Predicted GO
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Predicted GO
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	10	114

External Links

No external refs found!

Brara.F02982.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation