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  5. Brara.F02999.1

Brara.F02999.1


Description : regulatory protein (CIB) of blue light perception & bHLH-type transcription factor


Gene families : OG_42_0000125 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F02999.1
Cluster HCAA Clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
A4A49_20906 No alias transcription factor bhlh79 0.03 Orthogroups_2024-Update
At3g07340 No alias Transcription factor bHLH62... 0.03 Orthogroups_2024-Update
Glyma.02G025500 No alias BIG PETAL P 0.03 Orthogroups_2024-Update
Glyma.03G086800 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G141200 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Glyma.06G012200 No alias cryptochrome-interacting basic-helix-loop-helix 1 0.03 Orthogroups_2024-Update
Glyma.08G346300 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G146500 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Solyc09g057710 No alias bHLH transcription factor 057 0.03 Orthogroups_2024-Update
Sopen09g035810 No alias Helix-loop-helix DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006405 RNA export from nucleus IEP Predicted GO
BP GO:0006406 mRNA export from nucleus IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Predicted GO
BP GO:0050657 nucleic acid transport IEP Predicted GO
BP GO:0050658 RNA transport IEP Predicted GO
BP GO:0051028 mRNA transport IEP Predicted GO
BP GO:0051168 nuclear export IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051236 establishment of RNA localization IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 186 233
No external refs found!