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  5. Brara.F03008.1

Brara.F03008.1


Description : ligand-gated cation channel *(GLR)


Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F03008.1
Cluster HCAA Clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
A4A49_17163 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
A4A49_28968 No alias glutamate receptor 2.8 0.02 Orthogroups_2024-Update
At2g24710 No alias glutamate receptor 2.3 [Source:TAIR;Acc:AT2G24710] 0.03 Orthogroups_2024-Update
At2g29100 No alias Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:A0A178VR79] 0.05 Orthogroups_2024-Update
At5g27100 No alias Glutamate receptor 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O04660] 0.04 Orthogroups_2024-Update
Bradi4g30860 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Bradi4g30880 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Brara.H00536.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
GRMZM2G139933 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Glyma.07G226400 No alias glutamate receptor 2.8 0.03 Orthogroups_2024-Update
Glyma.13G093332 No alias glutamate receptor 2.5 0.03 Orthogroups_2024-Update
Glyma.13G172100 No alias glutamate receptor 2.7 0.05 Orthogroups_2024-Update
Glyma.13G233300 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Glyma.13G272400 No alias glutamate receptor 2.8 0.04 Orthogroups_2024-Update
Glyma.16G061701 No alias glutamate receptor 2 0.05 Orthogroups_2024-Update
HORVU5Hr1G010420.23 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
HORVU5Hr1G063420.2 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU6Hr1G083570.16 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
LOC_Os04g49570 No alias glutamate receptor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g26160 No alias glutamate receptor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10426811g0010 No alias (at1g05200 : 243.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
MA_9224859g0010 No alias (at4g35290 : 187.0) Encodes a putative glutamate... 0.05 Orthogroups_2024-Update
PSME_00000830-RA No alias (at2g29100 : 521.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00001291-RA No alias (at4g35290 : 534.0) Encodes a putative glutamate... 0.03 Orthogroups_2024-Update
PSME_00001292-RA No alias (at4g35290 : 567.0) Encodes a putative glutamate... 0.04 Orthogroups_2024-Update
PSME_00010771-RA No alias (at1g42540 : 809.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
PSME_00020365-RA No alias (at2g29120 : 505.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
PSME_00021963-RA No alias (at1g05200 : 294.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00026595-RA No alias (at1g42540 : 291.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00027644-RA No alias (at2g29120 : 490.0) member of Putative ligand-gated ion... 0.04 Orthogroups_2024-Update
Potri.001G374700 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Potri.006G172100 No alias glutamate receptor 2.8 0.05 Orthogroups_2024-Update
Potri.006G268700 No alias glutamate receptor 2.8 0.02 Orthogroups_2024-Update
Potri.011G062750 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Potri.018G010800 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Potri.018G011800 No alias glutamate receptor 2.8 0.03 Orthogroups_2024-Update
Potri.018G012100 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Seita.1G009400.1 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
Seita.1G346100.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sobic.002G208700.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sobic.002G209100.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sobic.004G013200.2 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
Sobic.004G324000.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sobic.010G231300.1 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
evm.model.contig_448.19 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001828 ANF_lig-bd_rcpt 67 397
IPR001638 Solute-binding_3/MltF_N 479 780
IPR001320 Iontro_rcpt 781 808
No external refs found!