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  5. Brara.F03055.1

Brara.F03055.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F03055.1
Cluster HCAA Clusters: Cluster_316

Target Alias Description ECC score Gene Family Method Actions
408755 No alias P-glycoprotein 18 0.02 Orthogroups_2024-Update
92485 No alias ATP binding cassette subfamily B19 0.03 Orthogroups_2024-Update
Brara.K00467.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Glyma.13G118800 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
MA_138894g0010 No alias (at2g47000 : 1332.0) Multidrug resistance ... 0.03 Orthogroups_2024-Update
Potri.001G139600 No alias P-glycoprotein 2 0.03 Orthogroups_2024-Update
Potri.010G210100 No alias P-glycoprotein 20 0.03 Orthogroups_2024-Update
Potri.015G000200 No alias ATP binding cassette subfamily B19 0.03 Orthogroups_2024-Update
Potri.017G085000 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Pp1s338_12V6 No alias multidrug pheromone mdr abc transporter family 0.03 Orthogroups_2024-Update
Seita.1G055700.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Seita.1G191000.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Seita.7G029100.1 No alias ABC-B-type transporter *(AMN3) & subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Solyc02g071340 No alias ABC transporter B family protein (AHRD V3.3 *** G7ILW7_MEDTR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000444 MIS12/MIND type complex IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016972 thiol oxidase activity IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
CC GO:1902554 serine/threonine protein kinase complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1990316 Atg1/ULK1 kinase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 377 526
IPR003439 ABC_transporter-like 1016 1165
IPR011527 ABC1_TM_dom 678 947
IPR011527 ABC1_TM_dom 38 302
No external refs found!