1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.F03078.1

Brara.F03078.1


Description : transcriptional co-repressor *(AFP/NINJA)


Gene families : OG_42_0000789 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000789_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F03078.1
Cluster HCAA Clusters: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
A4A49_14878 No alias ninja-family protein afp1 0.03 Orthogroups_2024-Update
At3g29575 No alias Ninja-family protein AFP3... 0.05 Orthogroups_2024-Update
Bradi1g59982 No alias ABI five binding protein 2 0.02 Orthogroups_2024-Update
Glyma.05G020400 No alias nuclear transport factor 2 (NTF2) family protein / RNA... 0.02 Orthogroups_2024-Update
LOC_Os01g68820 No alias expressed protein 0.03 Orthogroups_2024-Update
Seita.9G490900.1 No alias transcriptional co-repressor *(AFP/NINJA) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR032310 NINJA_B 87 127
IPR032308 Jas 228 262
IPR012463 Ninja_motif 40 76
No external refs found!