Brara.F03103.1

Description : pectin methylesterase

Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.F03103.1
Cluster	HCAA Clusters: Cluster_282

Target	Alias	Description	ECC score	Gene Family Method
Bradi4g00840	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
MA_10428625g0010	No alias	(at3g29090 : 374.0) Encodes an atypical pectin...	0.03	Orthogroups_2024-Update
Mp2g01420.1	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
Potri.017G054700	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
Pp1s67_6V6	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Pp1s67_89V6	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
Sobic.003G143600.1	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
Solyc12g098340	No alias	Pectinesterase (AHRD V3.3 *** K4DHK8_SOLLC)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	16Dec
BP	GO:0042545	cell wall modification	IEA	16Dec
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003993	acid phosphatase activity	IEP	Predicted GO
MF	GO:0004089	carbonate dehydratase activity	IEP	Predicted GO
CC	GO:0005739	mitochondrion	IEP	Predicted GO
CC	GO:0005750	mitochondrial respiratory chain complex III	IEP	Predicted GO
BP	GO:0043248	proteasome assembly	IEP	Predicted GO
CC	GO:0045275	respiratory chain complex III	IEP	Predicted GO
MF	GO:0060090	molecular adaptor activity	IEP	Predicted GO
CC	GO:0070069	cytochrome complex	IEP	Predicted GO
CC	GO:0070469	respiratory chain	IEP	Predicted GO
CC	GO:0098803	respiratory chain complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	7	297

External Links

No external refs found!