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  5. Brara.F03107.1

Brara.F03107.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F03107.1
Cluster HCAA Clusters: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
419575 No alias expansin A16 0.03 Orthogroups_2024-Update
A4A49_04302 No alias expansin-a10 0.04 Orthogroups_2024-Update
A4A49_13869 No alias expansin-a3 0.04 Orthogroups_2024-Update
A4A49_33199 No alias expansin-a15 0.03 Orthogroups_2024-Update
At1g12560 No alias EXPA7 [Source:UniProtKB/TrEMBL;Acc:A0A178W749] 0.04 Orthogroups_2024-Update
Brara.B03352.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
GRMZM2G105844 No alias expansin A1 0.03 Orthogroups_2024-Update
GRMZM2G339122 No alias expansin A1 0.04 Orthogroups_2024-Update
Glyma.06G021700 No alias expansin 11 0.04 Orthogroups_2024-Update
Glyma.06G195000 No alias expansin A15 0.05 Orthogroups_2024-Update
Glyma.07G229000 No alias expansin A15 0.05 Orthogroups_2024-Update
Glyma.19G222900 No alias expansin A17 0.02 Orthogroups_2024-Update
HORVU5Hr1G113580.5 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
LOC_Os01g60770 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g16800 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g06010 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g15840 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g49410 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g19570 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_172610g0010 No alias (at2g40610 : 331.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
MA_30127g0010 No alias (at2g40610 : 411.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
MA_316222g0010 No alias (at2g40610 : 383.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
MA_40671g0010 No alias (q40636|expa2_orysa : 346.0) Expansin-A2 precursor... 0.04 Orthogroups_2024-Update
PSME_00000399-RA No alias (q7xud0|exp10_orysa : 316.0) Expansin-A10 precursor... 0.03 Orthogroups_2024-Update
PSME_00045415-RA No alias (at4g01630 : 291.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
PSME_00052085-RA No alias (at1g69530 : 372.0) Member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
Potri.001G112866 No alias expansin A18 0.03 Orthogroups_2024-Update
Potri.004G123200 No alias expansin A1 0.03 Orthogroups_2024-Update
Pp1s363_2V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Seita.7G029300.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Seita.9G342900.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.003G338801.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.009G173700.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Solyc10g086520 No alias expansin 6 0.05 Orthogroups_2024-Update
Sopen06g015410 No alias Pollen allergen 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 162 239
IPR009009 RlpA-like_DPBB 73 151
No external refs found!