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  5. Brara.F03123.1

Brara.F03123.1


Description : auxin efflux transporter *(ABCB19) & subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F03123.1
Cluster HCAA Clusters: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
410515 No alias ATP binding cassette subfamily B19 0.02 Orthogroups_2024-Update
Bradi2g48610 No alias ABC transporter family protein 0.04 Orthogroups_2024-Update
Brara.D02299.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
LOC_Os01g50160 No alias MDR-like ABC transporter, putative, expressed 0.02 Orthogroups_2024-Update
MA_126766g0010 No alias (at4g25960 : 974.0) P-glycoprotein 2 (PGP2); FUNCTIONS... 0.04 Orthogroups_2024-Update
Sopen04g005490 No alias ABC transporter transmembrane region 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 1029 1177
IPR011527 ABC1_TM_dom 688 959
IPR011527 ABC1_TM_dom 43 315
IPR003439 ABC_transporter-like 384 532
No external refs found!