Brara.F03154.1

Description : subfamily ABCB transporter

Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.F03154.1
Cluster	HCAA Clusters: Cluster_226

Target	Alias	Description	ECC score	Gene Family Method
139408	No alias	P-glycoprotein 20	0.03	Orthogroups_2024-Update
176522	No alias	ATP binding cassette subfamily B4	0.03	Orthogroups_2024-Update
Bradi2g17710	No alias	P-glycoprotein 11	0.03	Orthogroups_2024-Update
Bradi2g47337	No alias	ATP binding cassette subfamily B4	0.02	Orthogroups_2024-Update
Bradi2g47347	No alias	P-glycoprotein 11	0.03	Orthogroups_2024-Update
Bradi2g47400	No alias	ATP binding cassette subfamily B4	0.03	Orthogroups_2024-Update
Bradi2g47410	No alias	ATP binding cassette subfamily B4	0.03	Orthogroups_2024-Update
GRMZM2G085236	No alias	ATP binding cassette subfamily B19	0.02	Orthogroups_2024-Update
Glyma.17G041300	No alias	ATP binding cassette subfamily B4	0.05	Orthogroups_2024-Update
Glyma.17G041400	No alias	P-glycoprotein 11	0.04	Orthogroups_2024-Update
Glyma.19G016700	No alias	ABC transporter family protein	0.03	Orthogroups_2024-Update
PSME_00005534-RA	No alias	(at3g62150 : 1137.0) P-glycoprotein 21 (PGP21);...	0.02	Orthogroups_2024-Update
PSME_00010270-RA	No alias	(at1g02520 : 571.0) P-glycoprotein 11 (PGP11); FUNCTIONS...	0.03	Orthogroups_2024-Update
PSME_00011041-RA	No alias	(at4g25960 : 1546.0) P-glycoprotein 2 (PGP2); FUNCTIONS...	0.05	Orthogroups_2024-Update
PSME_00023263-RA	No alias	(q6yuu5\|mdr_orysa : 1044.0) Putative multidrug...	0.03	Orthogroups_2024-Update
PSME_00023264-RA	No alias	(q6yuu5\|mdr_orysa : 1318.0) Putative multidrug...	0.03	Orthogroups_2024-Update
PSME_00030174-RA	No alias	(at2g47000 : 1538.0) Multidrug resistance ...	0.04	Orthogroups_2024-Update
PSME_00037351-RA	No alias	(at3g28345 : 1429.0) ABC transporter family protein;...	0.03	Orthogroups_2024-Update
PSME_00037733-RA	No alias	(at3g28345 : 1445.0) ABC transporter family protein;...	0.04	Orthogroups_2024-Update
PSME_00039058-RA	No alias	(q6yuu5\|mdr_orysa : 1225.0) Putative multidrug...	0.02	Orthogroups_2024-Update
Potri.002G019600	No alias	P-glycoprotein 13	0.03	Orthogroups_2024-Update
Potri.002G187400	No alias	P-glycoprotein 11	0.03	Orthogroups_2024-Update
Potri.003G094400	No alias	P-glycoprotein 2	0.03	Orthogroups_2024-Update
Pp1s338_12V6	No alias	multidrug pheromone mdr abc transporter family	0.04	Orthogroups_2024-Update
Sopen03g040850	No alias	ABC transporter transmembrane region	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0016020	membrane	IEA	16Dec
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	16Dec
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006488	dolichol-linked oligosaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0006490	oligosaccharide-lipid intermediate biosynthetic process	IEP	Predicted GO
BP	GO:0010035	response to inorganic substance	IEP	Predicted GO
BP	GO:0010038	response to metal ion	IEP	Predicted GO
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Predicted GO
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Predicted GO
MF	GO:0016755	transferase activity, transferring amino-acyl groups	IEP	Predicted GO
MF	GO:0016756	glutathione gamma-glutamylcysteinyltransferase activity	IEP	Predicted GO
BP	GO:0019748	secondary metabolic process	IEP	Predicted GO
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Predicted GO
BP	GO:0046937	phytochelatin metabolic process	IEP	Predicted GO
BP	GO:0046938	phytochelatin biosynthetic process	IEP	Predicted GO
MF	GO:0051213	dioxygenase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	843	985
IPR003439	ABC_transporter-like	202	349
IPR011527	ABC1_TM_dom	2	126
IPR011527	ABC1_TM_dom	504	771

External Links

No external refs found!

Brara.F03154.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation