At2g21420

Description : RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:Q9SJT6]

Gene families : OG_42_0000330 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At2g21420
Cluster	HCCA clusters: Cluster_218

Target	Alias	Description	ECC score	Gene Family Method
A4A49_40485	No alias	putative e3 ubiquitin-protein ligase ari8	0.03	Orthogroups_2024-Update
At3g45460	No alias	RBR-type E3 ubiquitin transferase...	0.02	Orthogroups_2024-Update
Brara.F01844.1	No alias	plant-specific E3 ubiquitin ligase *(RSL/RFA)	0.03	Orthogroups_2024-Update
Brara.K01584.1	No alias	plant-specific E3 ubiquitin ligase *(RSL/RFA)	0.03	Orthogroups_2024-Update
Kfl00608_0060	kfl00608_0060_v1.1	(at5g60250 : 107.0) zinc finger (C3HC4-type RING finger)...	0.02	Orthogroups_2024-Update
LOC_Os08g35060	No alias	protein binding protein, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os09g11170	No alias	protein binding protein, putative, expressed	0.02	Orthogroups_2024-Update
PSME_00042941-RA	No alias	(at3g53690 : 177.0) RING/U-box superfamily protein;...	0.03	Orthogroups_2024-Update
Seita.6G169500.1	No alias	plant-specific E3 ubiquitin ligase *(RSL/RFA)	0.03	Orthogroups_2024-Update
Sobic.002G126100.1	No alias	plant-specific E3 ubiquitin ligase *(RSL/RFA)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	InterProScan predictions
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	Predicted GO
MF	GO:0004252	serine-type endopeptidase activity	IEP	Predicted GO
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	Predicted GO
BP	GO:0007264	small GTPase mediated signal transduction	IEP	Predicted GO
MF	GO:0008233	peptidase activity	IEP	Predicted GO
MF	GO:0008236	serine-type peptidase activity	IEP	Predicted GO
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016759	cellulose synthase activity	IEP	Predicted GO
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Predicted GO
MF	GO:0017171	serine hydrolase activity	IEP	Predicted GO
MF	GO:0030234	enzyme regulator activity	IEP	Predicted GO
BP	GO:0030243	cellulose metabolic process	IEP	Predicted GO
BP	GO:0030244	cellulose biosynthetic process	IEP	Predicted GO
MF	GO:0030695	GTPase regulator activity	IEP	Predicted GO
MF	GO:0033743	peptide-methionine (R)-S-oxide reductase activity	IEP	Predicted GO
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predicted GO
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002867	IBR_dom	335	382
IPR002867	IBR_dom	257	320
IPR002156	RNaseH_domain	70	172

External Links

No external refs found!