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  5. Brara.F03236.1

Brara.F03236.1


Description : circadian clock activation factor *(TCP20) & TCP-type transcription factor


Gene families : OG_42_0000261 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000261_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F03236.1
Cluster HCAA Clusters: Cluster_311

Target Alias Description ECC score Gene Family Method Actions
A4A49_06505 No alias transcription factor tcp14 0.03 Orthogroups_2024-Update
At1g58100 No alias Transcription factor TCP8... 0.04 Orthogroups_2024-Update
Brara.B00281.1 No alias circadian clock repression factor *(CHE) & TCP-type... 0.03 Orthogroups_2024-Update
Glyma.10G240200 No alias TCP family transcription factor 0.03 Orthogroups_2024-Update
LOC_Os06g12230 No alias TCP-domain protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.011G055500 No alias TCP family transcription factor 0.03 Orthogroups_2024-Update
Solyc03g116320 No alias TCP transcription factor 16 0.03 Orthogroups_2024-Update
Sopen06g023690 No alias TCP family transcription factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006012 galactose metabolic process IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
MF GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
CC GO:0034998 oligosaccharyltransferase I complex IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
CC GO:0070461 SAGA-type complex IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 69 148
No external refs found!