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  5. At2g21440

At2g21440


Description : Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJT4]


Gene families : OG_42_0006127 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006127_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At2g21440
Cluster HCCA clusters: Cluster_6

    • Target Alias Description ECC score Gene Family Method Actions
    Bradi1g05110 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
    Brara.I04641.1 No alias pre-60S ribosomal subunit assembly factor *(NOP4) 0.06 Orthogroups_2024-Update
    Cre02.g104650 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 Orthogroups_2024-Update
    GRMZM5G819452 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
    Kfl00989_0040 kfl00989_0040_v1.1 (at2g21440 : 239.0) RNA-binding (RRM/RBD/RNP motifs)... 0.03 Orthogroups_2024-Update
    Mp7g13580.1 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.03 Orthogroups_2024-Update
    Pp1s543_12V6 No alias rna binding motif protein 28 isoform 1 0.03 Orthogroups_2024-Update
    Seita.9G051000.1 No alias pre-60S ribosomal subunit assembly factor *(NOP4) 0.07 Orthogroups_2024-Update
    Sobic.001G052400.2 No alias pre-60S ribosomal subunit assembly factor *(NOP4) 0.05 Orthogroups_2024-Update
    Solyc01g109990 No alias RNA-binding family protein, putative (AHRD V3.3 ***... 0.07 Orthogroups_2024-Update
    Sopen01g052180 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.05 Orthogroups_2024-Update
    evm.model.contig_3690.3 No alias (at2g21440 : 145.0) RNA-binding (RRM/RBD/RNP motifs)... 0.04 Orthogroups_2024-Update
    evm.model.tig00000144.75 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update

    Type GO Term Name Evidence Source
    MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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    Type GO Term Name Evidence Source
    MF GO:0003883 CTP synthase activity IEP Predicted GO
    CC GO:0005634 nucleus IEP Predicted GO
    BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
    BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
    BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
    BP GO:0006364 rRNA processing IEP Predicted GO
    BP GO:0006396 RNA processing IEP Predicted GO
    BP GO:0006399 tRNA metabolic process IEP Predicted GO
    BP GO:0006605 protein targeting IEP Predicted GO
    BP GO:0006612 protein targeting to membrane IEP Predicted GO
    BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
    BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
    BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
    MF GO:0008312 7S RNA binding IEP Predicted GO
    MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
    BP GO:0016070 RNA metabolic process IEP Predicted GO
    BP GO:0016072 rRNA metabolic process IEP Predicted GO
    MF GO:0016874 ligase activity IEP Predicted GO
    MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
    MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
    MF GO:0019843 rRNA binding IEP Predicted GO
    BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
    CC GO:0030684 preribosome IEP Predicted GO
    CC GO:0032040 small-subunit processome IEP Predicted GO
    BP GO:0034470 ncRNA processing IEP Predicted GO
    BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
    BP GO:0034660 ncRNA metabolic process IEP Predicted GO
    BP GO:0042254 ribosome biogenesis IEP Predicted GO
    CC GO:0043226 organelle IEP Predicted GO
    CC GO:0043227 membrane-bounded organelle IEP Predicted GO
    CC GO:0043229 intracellular organelle IEP Predicted GO
    CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
    BP GO:0044085 cellular component biogenesis IEP Predicted GO
    BP GO:0045047 protein targeting to ER IEP Predicted GO
    BP GO:0046483 heterocycle metabolic process IEP Predicted GO
    CC GO:0048500 signal recognition particle IEP Predicted GO
    BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
    BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
    BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
    BP GO:0072657 protein localization to membrane IEP Predicted GO
    BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
    BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
    MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
    MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
    BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
    InterPro domains Description Start Stop
    IPR000504 RRM_dom 23 91
    IPR000504 RRM_dom 333 402
    IPR000504 RRM_dom 563 623
    No external refs found!