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  5. Brara.F03436.1

Brara.F03436.1


Description : C2H2 subclass IDD transcription factor


Gene families : OG_42_0000119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F03436.1
Cluster HCAA Clusters: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
At1g25250 No alias IDD16 [Source:UniProtKB/TrEMBL;Acc:A0A178WG74] 0.03 Orthogroups_2024-Update
Bradi1g18370 No alias C2H2-like zinc finger protein 0.02 Orthogroups_2024-Update
GRMZM2G141031 No alias indeterminate(ID)-domain 16 0.04 Orthogroups_2024-Update
Glyma.01G176600 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
PSME_00020819-RA No alias (at2g01940 : 340.0) May be involved in an early event in... 0.04 Orthogroups_2024-Update
Pp1s63_51V6 No alias nucleic acid binding 0.02 Orthogroups_2024-Update
Sopen04g033710 No alias Zinc finger, C2H2 type 0.03 Orthogroups_2024-Update
Sopen08g018610 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen11g027970 No alias Zinc finger, C2H2 type 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR022755 Znf_C2H2_jaz 86 108
No external refs found!