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  5. Brara.F03510.1

Brara.F03510.1


Description : GARP subgroup PHL transcription factor


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F03510.1
Cluster HCAA Clusters: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
442062 No alias myb-like HTH transcriptional regulator family protein 0.02 Orthogroups_2024-Update
At3g24120 No alias Homeodomain-like superfamily protein [Source:TAIR;Acc:AT3G24120] 0.04 Orthogroups_2024-Update
GRMZM2G162409 No alias phosphate starvation response 1 0.04 Orthogroups_2024-Update
Glyma.03G166400 No alias phosphate starvation response 1 0.02 Orthogroups_2024-Update
Glyma.10G039700 No alias phosphate starvation response 1 0.02 Orthogroups_2024-Update
Glyma.12G089100 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G123000 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os09g12770 No alias Myb-like DNA-binding domain containing protein,... 0.03 Orthogroups_2024-Update
Potri.001G314800 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s143_30V6 No alias transfactor-like protein 0.02 Orthogroups_2024-Update
Seita.2G168900.1 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
Seita.3G029000.1 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
Solyc06g008200 No alias Myb-like transcription factor family protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen11g006610 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen11g026970 No alias MYB-CC type transfactor, LHEQLE motif 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Predicted GO
MF GO:0000976 transcription regulatory region sequence-specific DNA binding IEP Predicted GO
MF GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEP Predicted GO
MF GO:0001012 RNA polymerase II regulatory region DNA binding IEP Predicted GO
MF GO:0001067 regulatory region nucleic acid binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0032422 purine-rich negative regulatory element binding IEP Predicted GO
BP GO:0034508 centromere complex assembly IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
MF GO:0044212 transcription regulatory region DNA binding IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR025756 Myb_CC_LHEQLE 102 147
IPR001005 SANT/Myb 18 68
No external refs found!