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  5. Brara.F03556.1

Brara.F03556.1


Description : deubiquitinase


Gene families : OG_42_0000597 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000597_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F03556.1
Cluster HCAA Clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
68072 No alias PPPDE putative thiol peptidase family protein 0.01 Orthogroups_2024-Update
A4A49_62013 No alias desi-like protein 0.03 Orthogroups_2024-Update
At1g47740 No alias PPPDE putative thiol peptidase family protein... 0.03 Orthogroups_2024-Update
At1g80690 No alias F23A5.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SAI9] 0.04 Orthogroups_2024-Update
GRMZM2G071844 No alias PPPDE putative thiol peptidase family protein 0.03 Orthogroups_2024-Update
Glyma.17G216600 No alias PPPDE putative thiol peptidase family protein 0.03 Orthogroups_2024-Update
PSME_00034001-RA No alias (at1g47740 : 256.0) PPPDE putative thiol peptidase... 0.03 Orthogroups_2024-Update
Potri.002G134200 No alias PPPDE putative thiol peptidase family protein 0.03 Orthogroups_2024-Update
Sobic.001G543800.1 No alias deubiquitinase 0.03 Orthogroups_2024-Update
Solyc08g078220 No alias No description available 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008233 peptidase activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
InterPro domains Description Start Stop
IPR008580 PPPDE_dom 30 164
No external refs found!