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  5. Brara.F03787.1

Brara.F03787.1


Description : miRNA recruiting factor (AGO) of RNA-induced silencing complex (RISC) assembly


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F03787.1
Cluster HCAA Clusters: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
99227 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Bradi1g16060 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
Glyma.05G011300 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Orthogroups_2024-Update
Glyma.06G314500 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
LOC_Os02g45070 No alias PINHEAD, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00014451-RA No alias (at1g69440 : 623.0) Encodes ARGONAUTE7, a member of the... 0.02 Orthogroups_2024-Update
Potri.008G010500 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Potri.015G117350 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Pp1s7_194V6 No alias argonaute protein group 0.03 Orthogroups_2024-Update
Seita.3G070600.1 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 Orthogroups_2024-Update
Solyc03g098280 No alias Argonaute 1b 0.03 Orthogroups_2024-Update
Solyc06g072300 No alias Argonaute 1 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0004484 mRNA guanylyltransferase activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006370 7-methylguanosine mRNA capping IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003100 PAZ_dom 374 478
IPR032472 ArgoL2 488 534
IPR032473 Argonaute_Mid_dom 545 622
IPR014811 ArgoL1 296 345
IPR003165 Piwi 637 956
IPR032474 Argonaute_N 151 286
No external refs found!