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  5. Brara.F03876.1

Brara.F03876.1


Description : component *(eS25) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001610 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001610_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F03876.1
Cluster HCAA Clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
172404 No alias Ribosomal protein S25 family protein 0.04 Orthogroups_2024-Update
Bradi3g42900 No alias Ribosomal protein S25 family protein 0.05 Orthogroups_2024-Update
Brara.A00031.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.I04632.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
GRMZM2G057608 No alias Ribosomal protein S25 family protein 0.04 Orthogroups_2024-Update
GRMZM2G084868 No alias Function unknown 0.03 Orthogroups_2024-Update
Glyma.04G011100 No alias Ribosomal protein S25 family protein 0.06 Orthogroups_2024-Update
Glyma.11G115400 No alias Ribosomal protein S25 family protein 0.06 Orthogroups_2024-Update
Glyma.12G041300 No alias Ribosomal protein S25 family protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G001220.3 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Kfl00347_0040 kfl00347_0040_v1.1 (at4g39200 : 89.0) Ribosomal protein S25 family protein;... 0.02 Orthogroups_2024-Update
MA_104137g0010 No alias (at2g21580 : 130.0) Ribosomal protein S25 family... 0.03 Orthogroups_2024-Update
Potri.004G157200 No alias Ribosomal protein S25 family protein 0.04 Orthogroups_2024-Update
Pp1s21_4V6 No alias 40s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s26_213V6 No alias 40s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s36_84V6 No alias 40s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s59_8V6 No alias 40s ribosomal protein 0.03 Orthogroups_2024-Update
Seita.2G134200.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Seita.6G248800.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Sobic.003G322400.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.003G322532.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.003G338966.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Solyc02g069850 No alias ribosomal protein S25 0.05 Orthogroups_2024-Update
Sopen01g012450 No alias S25 ribosomal protein 0.04 Orthogroups_2024-Update
Sopen02g019010 No alias S25 ribosomal protein 0.04 Orthogroups_2024-Update
Sopen06g020450 No alias S25 ribosomal protein 0.04 Orthogroups_2024-Update
Sopen10g017830 No alias S25 ribosomal protein 0.04 Orthogroups_2024-Update
Sopen10g023380 No alias S25 ribosomal protein 0.06 Orthogroups_2024-Update
evm.model.contig_2033.4 No alias (at4g34555 : 106.0) Ribosomal protein S25 family... 0.06 Orthogroups_2024-Update
evm.model.tig00000037.5 No alias (at4g39200 : 85.1) Ribosomal protein S25 family protein;... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0000966 RNA 5'-end processing IEP Predicted GO
BP GO:0001682 tRNA 5'-leader removal IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006417 regulation of translation IEP Predicted GO
BP GO:0006448 regulation of translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010608 posttranscriptional regulation of gene expression IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0017182 peptidyl-diphthamide metabolic process IEP Predicted GO
BP GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine IEP Predicted GO
BP GO:0018202 peptidyl-histidine modification IEP Predicted GO
CC GO:0030677 ribonuclease P complex IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034227 tRNA thio-modification IEP Predicted GO
BP GO:0034248 regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034471 ncRNA 5'-end processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0090560 2-(3-amino-3-carboxypropyl)histidine synthase activity IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0099116 tRNA 5'-end processing IEP Predicted GO
BP GO:1900247 regulation of cytoplasmic translational elongation IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
BP GO:2000765 regulation of cytoplasmic translation IEP Predicted GO
InterPro domains Description Start Stop
IPR004977 Ribosomal_S25 10 105
No external refs found!